LOCUS AEC08549.1 379 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DNA glycosylase superfamily protein protein.
ACCESSION CP002685-4327
PROTEIN_ID AEC08549.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="ATNTH1"
/locus_tag="AT2G31450"
/gene_synonym="T28P16.6"
/gene_synonym="T28P16_6"
/inference="Similar to RNA sequence,
EST:INSD:EH885681.1,INSD:ES112115.1,INSD:EL312158.1,
INSD:DR380559.1,INSD:DR251791.1,INSD:AV790013.1,
INSD:DR251796.1,INSD:DR251793.1,INSD:DR251795.1,
INSD:EH829618.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY085041.1,INSD:BX819806.1,INSD:AJ272248.1,
INSD:BX820625.1"
/note="ATNTH1; CONTAINS InterPro DOMAIN/s:
Helix-hairpin-helix motif (InterPro:IPR000445),
Helix-hairpin-helix DNA-binding motif, class 1
(InterPro:IPR003583), Endonuclease III, iron-sulphur
binding site (InterPro:IPR004035), DNA glycosylase
(InterPro:IPR011257), Endonuclease III-like, iron-sulphur
cluster loop motif (InterPro:IPR003651), Endonuclease III,
conserved site-2 (InterPro:IPR004036), HhH-GPD domain
(InterPro:IPR003265); BEST Arabidopsis thaliana protein
match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14067
Blast hits to 14061 proteins in 2669 species: Archae -
367; Bacteria - 9308; Metazoa - 224; Fungi - 193; Plants -
158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI
BLink)."
/db_xref="Araport:AT2G31450"
/db_xref="TAIR:AT2G31450"
intron_pos 54:1 (1/10)
intron_pos 94:0 (2/10)
intron_pos 115:1 (3/10)
intron_pos 131:1 (4/10)
intron_pos 171:0 (5/10)
intron_pos 193:1 (6/10)
intron_pos 224:0 (7/10)
intron_pos 270:0 (8/10)
intron_pos 305:0 (9/10)
intron_pos 333:0 (10/10)
BEGIN
1 MILLVNGGAA TSIHPNAARF YRIGTMSRQI HGAVSSSKHI SLKTQHPLSD SNSELAYGAS
61 GSETRVYTRK KRLKQEPFEP LEKYSGKGVN THKLCGLPDI EDFAYKKTIG SPSSSRSTET
121 SITVTSVKTA GYPPENWVEV LEGIRQMRSS EDAPVDSMGC DKAGSFLPPT ERRFAVLLGA
181 LLSSQTKDQV NNAAIHRLHQ NGLLTPEAVD KADESTIKEL IYPVGFYTRK ATYMKKIARI
241 CLVKYDGDIP SSLDDLLSLP GIGPKMAHLI LHIAWNDVQG ICVDTHVHRI CNRLGWVSRP
301 GTKQKTTSPE ETRVALQQWL PKEEWVAINP LLVGFGQMIC TPIRPRCEAC SVSKLCPAAF
361 KETSSPSSKL KKSNRSKEP
//