LOCUS AEC08494.1 364 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana trichome birefringence-like protein
(DUF828) protein.
ACCESSION CP002685-4257
PROTEIN_ID AEC08494.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G31110"
/gene_synonym="T16B12.8"
/gene_synonym="T16B12_8"
/gene_synonym="TBL40"
/gene_synonym="TRICHOME BIREFRINGENCE-LIKE 40"
/inference="Similar to RNA sequence,
EST:INSD:DR233438.1,INSD:BP592706.1,INSD:AV440523.1,
INSD:ES035220.1,INSD:DR233437.1,INSD:BP611667.1,
INSD:DR233445.1,INSD:ES210081.1,INSD:ES194226.1,
INSD:ES067501.1,INSD:DR233444.1,INSD:EH872927.1,
INSD:ES186641.1,INSD:ES210792.1,INSD:ES189315.1,
INSD:AV533342.1,INSD:DR233442.1,INSD:ES020113.1,
INSD:ES048584.1,INSD:BX840355.1,INSD:EL153513.1,
INSD:EH871054.1,INSD:ES065918.1,INSD:DR233439.1,
INSD:DR233436.1,INSD:EL113338.1,INSD:DR233441.1,
INSD:DR233440.1,INSD:ES072519.1,INSD:BP860974.1,
INSD:EH989491.1,INSD:ES075767.1,INSD:EL108517.1,
INSD:DR375756.1,INSD:EL332410.1,INSD:ES216240.1,
INSD:AU227525.1,INSD:DR233443.1,INSD:EH891966.1,
INSD:ES161411.1,INSD:AU236573.1,INSD:ES059393.1,
INSD:ES139188.1,INSD:EL033813.1,INSD:T46381.1,
INSD:AV565003.1,INSD:BP785290.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY087549.1,INSD:BX842459.1,INSD:BX842257.1,
INSD:AK176895.1,INSD:BX842461.1,INSD:BT004296.1"
/note="INVOLVED IN: biological_process unknown; LOCATED
IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF231,
plant (InterPro:IPR004253); BEST Arabidopsis thaliana
protein match is: TRICHOME BIREFRINGENCE-LIKE 39
(TAIR:AT2G42570.1); Has 1336 Blast hits to 1317 proteins
in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 2; Plants - 1333; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink)."
/db_xref="Araport:AT2G31110"
/db_xref="TAIR:AT2G31110"
intron_pos 99:2 (1/4)
intron_pos 157:0 (2/4)
intron_pos 215:2 (3/4)
intron_pos 268:2 (4/4)
BEGIN
1 MGLCFQLNLA SLSLILFSSF PGLLAQSQQH FLGQNNTSLL SGGRCNLARG KWVYDSSYPL
61 YSAFSCPFID SEFNCQKAGR PDTNYQHFRW QPFSCPLPRF DGANFMRRMR GKKIMMVGDS
121 LSLNMFESLA CLLHASLPNA KYSLRRSQPL TSLTFQDYGV TINLYRTQFL VDVVQEKAGR
181 VLVLDSIKQA DAWLGMDVLI FNSWHWWTHT SGLQPWDYMR EGNQLYKDMN RLVAYYKGLN
241 TWARWINNNI VPSRTQVFFQ GVSPVHYDGR EWNEPLKSCN GQTQPFMGQR YPGGLPLGWV
301 VVNKVLSRIR KPVHLLDLTT LSEYRKDAHP SLYNGISKDL DCSHWCLPGL PDTWNLLLYS
361 SLTS
//