LOCUS AEC08365.1 346 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-directed DNA methylation 4 protein.
ACCESSION CP002685-4067
PROTEIN_ID AEC08365.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="RDM4"
/locus_tag="AT2G30280"
/gene_synonym="DEFECTIVE IN MERISTEM SILENCING 4"
/gene_synonym="DMS4"
/gene_synonym="RNA-directed DNA methylation 4"
/gene_synonym="T9D9.9"
/gene_synonym="T9D9_9"
/inference="Similar to RNA sequence,
EST:INSD:AU229482.1,INSD:ES086587.1,INSD:EL974787.1,
INSD:EH980158.1,INSD:EL002184.1,INSD:BP852187.1,
INSD:EL974724.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT005437.1,INSD:AK117472.1,INSD:BX819685.1"
/note="RNA-directed DNA methylation 4 (RDM4); CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF1762
(InterPro:IPR013883); Has 44351 Blast hits to 18281
proteins in 1030 species: Archae - 135; Bacteria - 13377;
Metazoa - 12547; Fungi - 4712; Plants - 1881; Viruses -
609; Other Eukaryotes - 11090 (source: NCBI BLink)."
/db_xref="Araport:AT2G30280"
/db_xref="TAIR:AT2G30280"
intron_pos 35:1 (1/8)
intron_pos 62:1 (2/8)
intron_pos 97:0 (3/8)
intron_pos 122:0 (4/8)
intron_pos 136:0 (5/8)
intron_pos 180:2 (6/8)
intron_pos 244:2 (7/8)
intron_pos 269:1 (8/8)
BEGIN
1 MDGVGESSTQ NEVEEKPVIV RVKRKVGQSL LDAFWLEINE RPLKRPTLDF SKLSISDSGE
61 RGPSVAEDVK PKKVLVRHLE TVTDSETTAD IIHSFFESDH NEKSCSKGKF EERKIAFKKD
121 NRKEQRLTKS VQKQQIASEN ARFEQIWRSR KGNKEGIHEK CHFFDVIRVD TEERRDNAQE
181 FTSLEDQKML ASFLPLLREC IPTAAEEIEA DIQSSHTEEY VYDYYAVNEE MDISEDSSKN
241 QFPLVIVEDE EEFCDGSDES DYDSEDSNAE DHPKTDYPEE EEEEEEEDDD DDDDDESEEE
301 KSEASDESDD EETSKRHVRS VLGDDEFDDY AEDVYGYSES DEEFES
//