LOCUS AEC08330.1 386 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana fatty acid desaturase 3 protein.
ACCESSION CP002685-4020
PROTEIN_ID AEC08330.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="FAD3"
/locus_tag="AT2G29980"
/gene_synonym="AtFAD3"
/gene_synonym="ENDOPLASMIC RETICULUM 18:2 DESATURASE"
/gene_synonym="F23F1.10"
/gene_synonym="F23F1_10"
/gene_synonym="fatty acid desaturase 3"
/gene_synonym="OMEGA-3 FATTY ACID DESATURASE"
/inference="Similar to RNA sequence,
EST:INSD:EL207693.1,INSD:EL017563.1,INSD:DR298888.1,
INSD:EL287823.1,INSD:EG516509.1,INSD:AV560090.1,
INSD:DR298906.1,INSD:EL103877.1,INSD:EH851505.1,
INSD:DR298896.1,INSD:EL240509.1,INSD:DR237069.1,
INSD:BE523427.1,INSD:AV519096.1,INSD:DR298905.1,
INSD:DR298887.1,INSD:EL048928.1,INSD:DR298900.1,
INSD:DR298893.1,INSD:DR298891.1,INSD:DR298889.1,
INSD:BE522459.1,INSD:AV542389.1,INSD:BP821140.1,
INSD:AV566142.1,INSD:AV558954.1,INSD:EL108673.1,
INSD:AV520154.1,INSD:AV526314.1,INSD:EL333300.1,
INSD:AV520877.1,INSD:DR298898.1,INSD:DR298903.1,
INSD:EH946218.1,INSD:BE521123.1,INSD:DR298902.1,
INSD:DR298892.1,INSD:ES038015.1,INSD:AV564230.1,
INSD:EG529412.1,INSD:AV560860.1,INSD:EH957890.1,
INSD:AV562578.1,INSD:EL142817.1,INSD:DR298908.1,
INSD:BE530701.1,INSD:BP561250.2,INSD:EL165729.1,
INSD:EL179478.1,INSD:DR298895.1,INSD:EL065338.1,
INSD:DR298886.1,INSD:EL078905.1,INSD:DR298894.1,
INSD:DR298907.1,INSD:EL264471.1,INSD:CB264155.1,
INSD:EL212601.1,INSD:BP594574.1,INSD:DR298899.1,
INSD:DR298901.1,INSD:DR298890.1,INSD:EL010658.1,
INSD:DR298904.1,INSD:EH800425.1,INSD:EL319682.1,
INSD:AV442052.1,INSD:AV526272.1,INSD:H36623.1,
INSD:DR298897.1,INSD:Z17683.1,INSD:AV786259.1,
INSD:EG500351.1,INSD:AW004215.1,INSD:BE523921.1,
INSD:AV527385.1,INSD:BE527856.1,INSD:BP627074.1,
INSD:DR351298.1,INSD:BP587887.1,INSD:BE521124.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX819659.1,INSD:AY096462.1,INSD:D17579.1,
INSD:AY063966.1,INSD:AK230026.1,INSD:BX821324.1,
INSD:BX821617.1"
/note="fatty acid desaturase 3 (FAD3); CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF3474
(InterPro:IPR021863), Fatty acid desaturase, type 1
(InterPro:IPR005804); BEST Arabidopsis thaliana protein
match is: fatty acid desaturase 8 (TAIR:AT5G05580.1); Has
2578 Blast hits to 2575 proteins in 659 species: Archae -
0; Bacteria - 965; Metazoa - 19; Fungi - 262; Plants -
918; Viruses - 0; Other Eukaryotes - 414 (source: NCBI
BLink)."
/db_xref="Araport:AT2G29980"
/db_xref="TAIR:AT2G29980"
intron_pos 103:2 (1/7)
intron_pos 133:2 (2/7)
intron_pos 156:0 (3/7)
intron_pos 187:0 (4/7)
intron_pos 249:0 (5/7)
intron_pos 276:0 (6/7)
intron_pos 322:0 (7/7)
BEGIN
1 MVVAMDQRTN VNGDPGAGDR KKEERFDPSA QPPFKIGDIR AAIPKHCWVK SPLRSMSYVV
61 RDIIAVAALA IAAVYVDSWF LWPLYWAAQG TLFWAIFVLG HDCGHGSFSD IPLLNSVVGH
121 ILHSFILVPY HGWRISHRTH HQNHGHVEND ESWVPLPERV YKKLPHSTRM LRYTVPLPML
181 AYPLYLCYRS PGKEGSHFNP YSSLFAPSER KLIATSTTCW SIMFVSLIAL SFVFGPLAVL
241 KVYGVPYIIF VMWLDAVTYL HHHGHDEKLP WYRGKEWSYL RGGLTTIDRD YGIFNNIHHD
301 IGTHVIHHLF PQIPHYHLVD ATKAAKHVLG RYYREPKTSG AIPIHLVESL VASIKKDHYV
361 SDTGDIVFYE TDPDLYVYAS DKSKIN
//