LOCUS AEC08275.1 483 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana CCCH-type zinc fingerfamily protein
with RNA-binding domain-containing protein protein.
ACCESSION CP002685-3944
PROTEIN_ID AEC08275.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="MAC5B"
/locus_tag="AT2G29580"
/gene_synonym="F16P2.4"
/gene_synonym="F16P2_4"
/gene_synonym="MOS4-associated complex subunit 5B"
/inference="Similar to RNA sequence,
EST:INSD:AV830352.1,INSD:BP794126.1,INSD:BP782179.1,
INSD:ES184015.1,INSD:AV563885.1,INSD:ES165127.1,
INSD:Z37482.1,INSD:AV544907.1,INSD:EH914856.1,
INSD:ES140913.1,INSD:BP848294.1,INSD:EL018618.1,
INSD:ES180336.1,INSD:BP848274.1,INSD:Z37181.1,
INSD:AV811405.1,INSD:ES200986.1,INSD:ES139654.1,
INSD:EL064149.1,INSD:AV530934.1,INSD:ES157027.1,
INSD:CB254123.1,INSD:ES162634.1,INSD:ES161572.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF428354.1,INSD:BT002621.1"
/note="CCCH-type zinc fingerfamily protein with
RNA-binding domain; FUNCTIONS IN: RNA binding, zinc ion
binding, nucleotide binding, nucleic acid binding;
EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C
globular stage, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc
finger, CCCH-type (InterPro:IPR000571), RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: CCCH-type zinc fingerfamily
protein with RNA-binding domain (TAIR:AT1G07360.1); Has
12789 Blast hits to 10406 proteins in 530 species: Archae
- 8; Bacteria - 415; Metazoa - 5528; Fungi - 2943; Plants
- 2628; Viruses - 129; Other Eukaryotes - 1138 (source:
NCBI BLink)."
/db_xref="Araport:AT2G29580"
/db_xref="TAIR:AT2G29580"
intron_pos 36:0 (1/3)
intron_pos 126:0 (2/3)
intron_pos 200:2 (3/3)
BEGIN
1 MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR
61 DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL NISTHDSIPK SDVNREFFAE
121 EHDRKTRAGL DYESSFGKIR PNDTIRMLQR TTPYYKRNRA HICSFFIRGE CTRGDECPYR
181 HEMPETGELS QQNIKDRYYG VNDPVALKLL GKAGEMGTLE SPEDQSIRTL YVGGLNSRVL
241 EQDIRDQFYA HGEIESIRIL AEKACAFVTY TTREGAEKAA EELSNRLVVN GQRLKLTWGR
301 PQVPKPDQDG SNQQGSVAHS GLLPRAVISQ QQNQPPPMLQ YYMHPPPPQP PHQDRPFYPS
361 MDPQRMGAVS SSKESGSSTS DNRGASSSSY TMPPHGHYPQ HQPYPPPSYG GYMQPPYQQY
421 PPYHHGHSQQ ADHDYPQQPG PGSRPNPPHP SSVSAPPPDS VSAAPSGSSQ QSADAAVTTG
481 SSQ
//