LOCUS AEC08135.1 882 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002685-3763
PROTEIN_ID AEC08135.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G28540"
/gene_synonym="T17D12.10"
/gene_synonym="T17D12_10"
/inference="Similar to RNA sequence,
EST:INSD:EG438178.1,INSD:DR356674.1,INSD:BP812468.1,
INSD:ES185427.1,INSD:EG438134.1,INSD:BX841412.1,
INSD:EG438175.1,INSD:EG438131.1,INSD:BP615503.1,
INSD:Z37579.1,INSD:EG438188.1,INSD:EG438172.1,
INSD:AV547917.1,INSD:BX836842.1,INSD:Z37578.1,
INSD:EG438189.1,INSD:ES051919.1,INSD:EG438187.1,
INSD:ES089480.1,INSD:EG438173.1,INSD:AU237272.1,
INSD:ES112919.1,INSD:EL056333.1,INSD:EG438182.1,
INSD:EG438179.1,INSD:EG438130.1,INSD:EG438184.1,
INSD:EG438177.1,INSD:EG502910.1,INSD:EG438183.1,
INSD:EG438181.1,INSD:EH961557.1,INSD:EG438176.1,
INSD:EG438132.1,INSD:EG498094.1,INSD:EG438180.1,
INSD:EG438186.1,INSD:EG438129.1,INSD:EL291022.1,
INSD:EH990310.1,INSD:EG438127.1,INSD:BP834456.1"
/note="RNA binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: nucleotide binding, zinc ion binding,
nucleic acid binding; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Zinc finger, RING-type
(InterPro:IPR001841), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677), RNA recognition, domain 1
(InterPro:IPR003954); BEST Arabidopsis thaliana protein
match is: RNA binding (RRM/RBD/RNP motifs) family protein
(TAIR:AT3G45630.1); Has 925 Blast hits to 706 proteins in
218 species: Archae - 0; Bacteria - 26; Metazoa - 245;
Fungi - 180; Plants - 141; Viruses - 0; Other Eukaryotes -
333 (source: NCBI BLink)."
/db_xref="Araport:AT2G28540"
/db_xref="TAIR:AT2G28540"
intron_pos 32:0 (1/12)
intron_pos 74:2 (2/12)
intron_pos 125:0 (3/12)
intron_pos 161:2 (4/12)
intron_pos 189:2 (5/12)
intron_pos 206:0 (6/12)
intron_pos 236:2 (7/12)
intron_pos 281:0 (8/12)
intron_pos 307:2 (9/12)
intron_pos 763:1 (10/12)
intron_pos 803:1 (11/12)
intron_pos 875:0 (12/12)
BEGIN
1 MNEKGEKTCP LCTEEMDLTD QHLKPCKCGY QICVWCWHHI IEMAEKDKTE GRCPACRTRY
61 DKEKIVGMTV SCERLVAEFY IDRKKSQKAK PKPAEGRKDL TGVRVIQRNL VYVMSLPFDL
121 ADEDMFQRRE YFGQYGKVVK VAMSRTAAGA VQQFPNNTCS VYITYSKEEE AIRCIRSVHG
181 FILDGRNLKA CFGTMKYCHA WLRNMPCSNA ECLYLHEIGA QEDSFSKDET ISAHMRKMVQ
241 DITGWRDHYV RRSGSMLPPP VDDYVDNESS TRIIPKVVLN NVHSAAKNSP PNDSNSHSVT
301 LPAGAMWGMH SSVPNTPSSR EPLRDKSATV SSAVAINPTQ ISSRSDELRK PALEAAGGNV
361 LKPQSLLDGK TDFPELSSSN KTQISNSRNV VSASVDNSRA ISEPSDCTDL PEHTSLSNGN
421 KMINRRIQNG CSNVVSVDAD SVVDGYHGIT RSDKSHIDHA SIKPTLTEVS QDYLQRCVDE
481 PREVQPLQKS GRTNANEVGV SREEVNRGTS LMSPLGTGHY LEAEDDISLF YRQRLKDPEV
541 LSCQSNGFLR PSNCMQPCSS QYKAEHDETR TVFGSSYSDS RGSNIAPISN GYTEMPLSEP
601 NQLNGSLNHS ILVPDKARDT QPIENCFVDS HESPSEIDDR IIANIMSLDL DEYLTSPHNY
661 ANPFGESDEE ARSLKLASSS KVEDNQSRFS FARQEEPKDQ AFDSYNASNQ MSRGNDFYQN
721 SSERQSPNMG MFGTYNGLSS CYRRGLDYVT ESSTLPSSYK PTSVPRCPVS APPGFSVPTP
781 SRPPPPGFSS NGRDHQMIDG FSGNSRFSDS IAYGNHYQQS LPIENVRDVQ YMDPAILAVG
841 QGFENASLDF RSNFQGNTNM YGSAAKLQQQ QQQAVYRSIS RQ
//