LOCUS AEC08099.1 3529 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana P-loop containing nucleoside triphosphate
hydrolases superfamily protein protein.
ACCESSION CP002685-3723
PROTEIN_ID AEC08099.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="SYD"
/locus_tag="AT2G28290"
/gene_synonym="CHR3"
/gene_synonym="CHROMATIN REMODELING COMPLEX SUBUNIT R"
/gene_synonym="CHROMATIN REMODELING COMPLEX SUBUNIT R 3"
/gene_synonym="SPLAYED"
/inference="Similar to RNA sequence,
EST:INSD:EL147426.1,INSD:EL968414.1,INSD:EG439171.1,
INSD:ES161709.1,INSD:EL111235.1,INSD:ES064955.1,
INSD:ES029089.1,INSD:AI994368.1,INSD:EL264691.1,
INSD:W43230.1,INSD:ES069379.1,INSD:EG465049.1,
INSD:AV547453.1,INSD:AV530561.1,INSD:ES008244.1,
INSD:EL169424.1,INSD:ES060761.1,INSD:EG507493.1,
INSD:AV528539.1,INSD:EH972675.1,INSD:ES207959.1,
INSD:ES161710.1,INSD:ES104467.1,INSD:ES051543.1,
INSD:DR363494.1,INSD:EH853216.1,INSD:ES022794.1,
INSD:EL333098.1,INSD:DR308300.1,INSD:EH812975.1,
INSD:AV548063.1,INSD:AV547265.1,INSD:ES197586.1,
INSD:EG507492.1,INSD:AV548722.1,INSD:EL024836.1,
INSD:DR368822.1,INSD:EG478774.1,INSD:ES031279.1,
INSD:ES009797.1,INSD:EG464998.1,INSD:EL112680.1,
INSD:AV522977.1,INSD:ES214097.1,INSD:T21639.1,
INSD:DR371156.1,INSD:EH988369.1,INSD:EL114767.1,
INSD:EL118739.1,INSD:EG507491.1,INSD:ES128092.1,
INSD:EL221016.1,INSD:EL315142.1,INSD:EG507494.1,
INSD:EL180052.1,INSD:ES135051.1,INSD:EL991684.1,
INSD:EL201700.1,INSD:ES008490.1"
/inference="similar to RNA sequence, mRNA:INSD:AY088490.1"
/note="SPLAYED (SYD); CONTAINS InterPro DOMAIN/s:
DEAD-like helicase, N-terminal (InterPro:IPR014001),
DNA/RNA helicase, C-terminal (InterPro:IPR001650),
Helicase/SANT-associated, DNA binding
(InterPro:IPR014012), Helicase, superfamily 1/2,
ATP-binding domain (InterPro:IPR014021), SNF2-related
(InterPro:IPR000330); BEST Arabidopsis thaliana protein
match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has
37993 Blast hits to 29119 proteins in 2440 species: Archae
- 313; Bacteria - 8300; Metazoa - 11402; Fungi - 6833;
Plants - 2357; Viruses - 252; Other Eukaryotes - 8536
(source: NCBI BLink)."
/db_xref="Araport:AT2G28290"
/db_xref="TAIR:AT2G28290"
intron_pos 37:0 (1/33)
intron_pos 57:2 (2/33)
intron_pos 96:1 (3/33)
intron_pos 226:1 (4/33)
intron_pos 245:0 (5/33)
intron_pos 298:2 (6/33)
intron_pos 320:1 (7/33)
intron_pos 451:1 (8/33)
intron_pos 504:0 (9/33)
intron_pos 536:2 (10/33)
intron_pos 598:2 (11/33)
intron_pos 659:0 (12/33)
intron_pos 723:0 (13/33)
intron_pos 737:2 (14/33)
intron_pos 756:2 (15/33)
intron_pos 789:0 (16/33)
intron_pos 846:2 (17/33)
intron_pos 918:0 (18/33)
intron_pos 960:0 (19/33)
intron_pos 990:0 (20/33)
intron_pos 1029:0 (21/33)
intron_pos 1056:0 (22/33)
intron_pos 1092:0 (23/33)
intron_pos 1148:2 (24/33)
intron_pos 1175:0 (25/33)
intron_pos 1200:0 (26/33)
intron_pos 1232:2 (27/33)
intron_pos 1268:2 (28/33)
intron_pos 1288:0 (29/33)
intron_pos 1365:0 (30/33)
intron_pos 1688:1 (31/33)
intron_pos 1753:1 (32/33)
intron_pos 3339:1 (33/33)
BEGIN
1 MTSSSHNIEL EAAKFLHKLI QDSKDEPAKL ATKLYVILQH MKTSGKENTM PYQVISRAMD
61 TVVNQHGLDI EALKSSCLPH PGGTQTEDSG SAHLAGSSQA VGVSNEGKAT LVENEMTKYD
121 AFTSGRQLGG SNSASQTFYQ GSGTQSNRSF DRESPSNLDS TSGISQPHNR SETMNQRDVK
181 SSGKRKRGES SLSWDQNMDN SQIFDSHKID DQTGEVSKIE MPGNSGDIRN LHVGLSSDAF
241 TTPQCGWQSS EATAIRPAIH KEPGNNVAGE GFLPSGSPFR EQQLKQLRAQ CLVFLALRNG
301 LVPKKLHVEI ALRNTFREED GFRGELFDPK GRTHTSSDLG GIPDVSALLS RTDNPTGRLD
361 EMDFSSKETE RSRLGEKSFA NTVFSDGQKL LASRIPSSQA QTQVAVSHSQ LTFSPGLTKN
421 TPSEMVGWTG VIKTNDLSTS AVQLDEFHSS DEEEGNLQPS PKYTMSQKWI MGRQNKRLLV
481 DRSWSLKQQK ADQAIGSRFN ELKESVSLSD DISAKTKSVI ELKKLQLLNL QRRLRSEFVY
541 NFFKPIATDV EHLKSYKKHK HGRRIKQLEK YEQKMKEERQ RRIRERQKEF FGGLEVHKEK
601 LEDLFKVRRE RLKGFNRYAK EFHKRKERLH REKIDKIQRE KINLLKINDV EGYLRMVQDA
661 KSDRVKQLLK ETEKYLQKLG SKLKEAKLLT SRFENEADET RTSNATDDET LIENEDESDQ
721 AKHYLESNEK YYLMAHSIKE NINEQPSSLV GGKLREYQMN GLRWLVSLYN NHLNGILADE
781 MGLGKTVQVI SLICYLMETK NDRGPFLVVV PSSVLPGWQS EINFWAPSIH KIVYCGTPDE
841 RRKLFKEQIV HQKFNVLLTT YEYLMNKHDR PKLSKIHWHY IIIDEGHRIK NASCKLNADL
901 KHYVSSHRLL LTGTPLQNNL EELWALLNFL LPNIFNSSED FSQWFNKPFQ SNGESSAEEA
961 LLSEEENLLI INRLHQVLRP FVLRRLKHKV ENELPEKIER LIRCEASAYQ KLLMKRVEDN
1021 LGSIGNAKSR AVHNSVMELR NICNHPYLSQ LHSEEVNNII PKHFLPPIVR LCGKLEMLDR
1081 MLPKLKATDH RVLFFSTMTR LLDVMEDYLT LKGYKYLRLD GQTSGGDRGA LIDGFNKSGS
1141 PFFIFLLSIR AGGVGVNLQA ADTVILFDTD WNPQVDLQAQ ARAHRIGQKK DVLVLRFETV
1201 NSVEEQVRAS AEHKLGVANQ SITAGFFDNN TSAEDRKEYL ESLLRESKKE EDAPVLDDDA
1261 LNDLIARRES EIDIFESIDK QRKENEMETW NTLVHGPGSD SFAHIPSIPS RLVTEDDLKL
1321 LYETMKLNDV PMVAKESTVG MKRKDGSMGG LDTHQYGRGK RAREVRSYEE KLTEEEFEKL
1381 CQTESPDSPQ GKGEGSERSL ANDTSNIPVE NSSDTLLPTS PTQAITVQPM EPVRPQSHTL
1441 KEETQPIKRG RGRPKRTDKA LTPVSLSAVS RTQATGNAIS SAATGLDFVS SDKRLEAASH
1501 PTSSLALTSP DLSGPPGFQS LPASPAPTPI RGRGRGRSRG RGAGRGRRVE GVLHGSNSSI
1561 TQRTETATSL ASDAEATKFA LPRSASEIVS RVPKANEGST SNPDQVSPVH SATTALRSDK
1621 AADKDLDAPP GFDSGSHVQT LNVLENSSER KAFAVKKRPL IQGVSSQHPG PNKQPLDLPV
1681 STSSTLLGGG PVQNQNAVSS VCDGSKSPSE GRTYTALQGV TTAPSDATLP MSSQPSDATL
1741 PMSSQPVGST VEAQEANVPS LPAALPAKRR VRNLPSRGET PKRQGKRRGQ PLPATDASSA
1801 RSTGLTPQIE VKVGNLSGTK AKFDAVAKEQ PHFSQSVAPD IHSSGSLSQE IRRDTSGTGG
1861 SARKQTADVT DVARVMKEIF SETSLLKHKV GEPSATTRTN VPDAQSPGEM NLHTVETHKA
1921 EDSSGLKNQE ALYNLSKADK LVSDIPHPVP GDLTTSGSVA NKDVDIGSSK VAAENELVKI
1981 PGGDVDSSVI QLSLGNTLTA KSSLEKCTAD QLLGEKLSQE GETTPASDGE TCHLAEETAS
2041 SLSYVRSEPT ASASTTAEPL PTDKLEKNIS FQDEVKTLNG DKREAILLSS EEQTNVNSKI
2101 ETNSEELQAS RTDEVPHVDG KSVDVANQTV KEDEAKHSVE IQSSMLEPDE LPNAGQKGHS
2161 SIDLQPLVLV TSNENAMSLD DKDYDPISKS ADIEQDPEES VFVQGVGRPK VGTADTQMED
2221 TNDAKLLVGC SVESEEKEKT LQSLIPGDDA DTEQDPEESV SDQRPKVGSA YTQMEDTDEA
2281 KLLMGCSVES EEKEKTLQSH IPGDDADTEK NPEESVSVQG VDRPKVGTTD TQMEDTNDAK
2341 LLVGCSVASE EKEKTLQSHI PGDDADTEQN PEESVSVQGV NRPKVGNANT QMEDTDEAKV
2401 LVGCSVESEE KEKTLQSHIP GDDADTEQNP EESVSNFDRP KDGTADTHME DIDDAKLLVG
2461 CSVESEEKEK SLQSHMPSDD AVLHAPFENT KDSKGDDLHG ESLVSCPTME VMEQKGFESE
2521 THARTDSGGI DRGNEVSENM SDGVKMNISS VQVPDASHDL NVSQDQTDIP LVGGIDPEHV
2581 QENVDVPASP HGAAPNIVIF QSEGHLSPSI LPDDVAGQLE SMSNDEKTNI SSEQVPDVSH
2641 DLKVSQDQTD IPPVGGIVPE NLQEIVDVPA SPHGVVPDVV VSQSEEIQSP SILPDDVPGQ
2701 PDDGNCEKMD TMQNNTSIDI GITSGKTCQP SSSTQPEDEN RNSLSHCEPS EVVEQRDSRD
2761 QVCIGSVESQ VEISSAILEN RSADIQPPQS ILVDQKDIEE SKEPGIESAD VSLHQLADIQ
2821 AEPSNLVDQM DIEESKEPGT ESADVSLHQL ADIQPGPSIL VDQMDTEKSK EPGTESADVS
2881 LHQLADIQPG PSILVDQMDT EKSKEPGTES ADVSLHQLAD IQPGPSILVD QMDTEEFKNP
2941 DVSLHQLADI EPSLSISAVQ KNIEDKDQSH VETAGSELVD VSAECSTEPQ VQLPPSSEPV
3001 GDMHVHLGAS KSEIVAEGTD FSSSLPKTEE ENAKSQLADT EPSSSLTAVQ KNIEDQVETA
3061 GCEFVVVSTG CSTEPQVQLP PSAEPVVAEG TEFPSSLLMT GVDNSSHLMT GVDNAKTHLA
3121 DVVPSSSPTT MEKNIEAQDQ DQVTTGGCGL VDVLTECSSE PQLQLPPSAE PVISEGTELA
3181 TLPLTEEENA DSQLANIEPS SSPSVVEKNI EAQDQDQVKT AGCELVSTGC SSEPQVHLPP
3241 SAEPDGDIHV HLKETEKSES MVVVGEGTAF PSSLPVTEEG NAESQLADTE PFTSPTVVEK
3301 NIKDQEQVET TGCGLVDDST GCSSEPQVQL PPSAEPMEGG CDLINVPSGC STEPQIQLSS
3361 SAEPEEGMHI HLEAAMNSET VVTEGSELPS SLPMTEDENA DGQLAEVEPS VSLTVEQTNI
3421 EEKDHIETAE CELVDVSPGC SSQPEVKFPP SPDAVGGMDV HLETVVTEDT DSNSSLPKTE
3481 EKDAENPSDR LDGESDGTTV ATVEGTCVES NSLVAEESNI EVPKDNEDV
//