LOCUS AEC08053.1 181 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana histone deacetylase-related / HD-
like protein protein.
ACCESSION CP002685-3646
PROTEIN_ID AEC08053.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="HDT4"
/locus_tag="AT2G27840"
/gene_synonym="F15K20.6"
/gene_synonym="F15K20_6"
/gene_synonym="HD2D"
/gene_synonym="HDA13"
/gene_synonym="HDT04"
/gene_synonym="HISTONE DEACETYLASE"
/gene_synonym="HISTONE DEACETYLASE 13"
/gene_synonym="histone deacetylase 2D"
/inference="Similar to RNA sequence,
EST:INSD:EL986417.1,INSD:ES018493.1,INSD:DR297197.1,
INSD:DR379173.1,INSD:DR373732.1,INSD:BP671651.1,
INSD:Z26451.1,INSD:AI999559.1,INSD:DR325152.1,
INSD:ES111786.1,INSD:ES131334.1,INSD:EH909696.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT008535.1,INSD:AF255713.1"
/note="HDT4; FUNCTIONS IN: histone deacetylase activity;
INVOLVED IN: production of siRNA involved in RNA
interference; LOCATED IN: nucleolus; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: histone deacetylase
2B (TAIR:AT5G22650.2); Has 725 Blast hits to 661 proteins
in 171 species: Archae - 0; Bacteria - 166; Metazoa - 184;
Fungi - 55; Plants - 136; Viruses - 17; Other Eukaryotes -
167 (source: NCBI BLink)."
/db_xref="Araport:AT2G27840"
/db_xref="TAIR:AT2G27840"
intron_pos 7:0 (1/6)
intron_pos 80:2 (2/6)
intron_pos 87:1 (3/6)
intron_pos 99:1 (4/6)
intron_pos 119:0 (5/6)
intron_pos 166:1 (6/6)
BEGIN
1 MVHASQVTLG DVEKVKKDET FAVYVKIGDD ENGFMIGNLS QKFPQFSIDL YLGHEFEISH
61 NSTSSVYLIG YRTFDAFDEL DEEIDSDSEL DEYMEQQIAA LPQNEINPEE DDESDSDEMG
121 LDEDDDSSDE EDVEAEAPLK VAPPSKKMPN GAFEIAKGGK KNKSSGGKKR CPFPCGPSCK
181 K
//