LOCUS AEC07974.1 116 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002685-3550
PROTEIN_ID AEC07974.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G27330"
/gene_synonym="F12K2.9"
/inference="Similar to RNA sequence,
EST:INSD:DR196126.1,INSD:EL180342.1,INSD:EL120695.1,
INSD:ES063896.1,INSD:DR196125.1,INSD:DR372894.1,
INSD:DR196127.1,INSD:DR196128.1,INSD:EH871135.1,
INSD:DR196132.1,INSD:EH805126.1,INSD:EH935152.1,
INSD:DR196131.1,INSD:EH882305.1,INSD:ES195716.1,
INSD:EL336812.1,INSD:DR196129.1,INSD:ES077084.1,
INSD:DR196130.1,INSD:H76122.1,INSD:DR196133.1,
INSD:ES105858.1,INSD:EL206044.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX821840.1,INSD:BT025704.1,INSD:BX821576.1,
INSD:AY085819.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: nucleotide binding, nucleic acid binding;
INVOLVED IN: biological_process unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: RNA binding (RRM/RBD/RNP motifs) family protein
(TAIR:AT5G06210.1); Has 12115 Blast hits to 12109 proteins
in 1409 species: Archae - 61; Bacteria - 8502; Metazoa -
534; Fungi - 454; Plants - 424; Viruses - 1; Other
Eukaryotes - 2139 (source: NCBI BLink)."
/db_xref="Araport:AT2G27330"
/db_xref="TAIR:AT2G27330"
intron_pos 27:1 (1/3)
intron_pos 50:1 (2/3)
intron_pos 86:0 (3/3)
BEGIN
1 MLTQFLYRSF TPLLFSRSFS STLFVKGISF SSTEETLTQA FSQYGQVLKV DVIMDKIRCR
61 PKGFAYVTFS SKEEAEKALL ELNAQLVDGR VVILDTTKAA KHNPPDTKPN HAGGDS
//