LOCUS AEC07778.1 632 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana KH domain-containing protein protein.
ACCESSION CP002685-3283
PROTEIN_ID AEC07778.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G25970"
/gene_synonym="F17H15.1"
/gene_synonym="F17H15_1"
/inference="Similar to RNA sequence,
EST:INSD:EL112286.1,INSD:BP621620.1,INSD:AV794757.1,
INSD:ES119824.1,INSD:AV795581.1,INSD:BP789110.1,
INSD:ES004424.1,INSD:AI998943.1,INSD:AV830536.1,
INSD:ES077759.1,INSD:EL967801.1,INSD:BP786179.1,
INSD:CF773191.1,INSD:EL967619.1,INSD:BP621429.1,
INSD:AI100334.1,INSD:BP562210.2,INSD:DR341106.1,
INSD:AI993084.1,INSD:EL200960.1,INSD:ES155071.1,
INSD:BP794591.1,INSD:DR370368.1,INSD:DR260521.1,
INSD:ES057462.1,INSD:BP793226.1,INSD:AV551260.1,
INSD:BP619505.1,INSD:EL062566.1,INSD:EH921488.1,
INSD:DR341108.1,INSD:EH954384.1,INSD:ES194228.1,
INSD:BE525913.1,INSD:EG502892.1,INSD:ES179027.1,
INSD:ES009438.1,INSD:ES192670.1,INSD:BP839483.1,
INSD:EL225413.1,INSD:CF773538.1,INSD:EL070752.1,
INSD:AV558159.1,INSD:AV803375.1,INSD:ES148667.1,
INSD:ES213567.1,INSD:DR341109.1,INSD:AV806900.1,
INSD:BP794149.1,INSD:ES212376.1,INSD:EL332765.1,
INSD:BP589343.1,INSD:T42667.1,INSD:BP617390.1,
INSD:BP787229.1,INSD:BP783727.1,INSD:DR260522.1,
INSD:BP607593.1,INSD:BP668233.1,INSD:AV812047.1,
INSD:DR341110.1,INSD:EH964724.1,INSD:BP786257.1,
INSD:DR341111.1,INSD:ES056682.1,INSD:DR341107.1,
INSD:ES093313.1,INSD:EG502891.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK226845.1,INSD:AY078954.1"
/note="KH domain-containing protein; FUNCTIONS IN: RNA
binding, nucleic acid binding; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: K Homology, type 1, subgroup
(InterPro:IPR018111), K Homology (InterPro:IPR004087), K
Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis
thaliana protein match is: KH domain-containing protein
(TAIR:AT1G33680.1); Has 68611 Blast hits to 35814 proteins
in 1587 species: Archae - 63; Bacteria - 12513; Metazoa -
31065; Fungi - 9811; Plants - 6751; Viruses - 351; Other
Eukaryotes - 8057 (source: NCBI BLink)."
/db_xref="Araport:AT2G25970"
/db_xref="TAIR:AT2G25970"
intron_pos 112:1 (1/5)
intron_pos 207:0 (2/5)
intron_pos 241:0 (3/5)
intron_pos 265:0 (4/5)
intron_pos 305:0 (5/5)
BEGIN
1 MADESQYSSD TYSNKRKYEE PTAPPPSTRR PTGFSSGPIP SASVDPTAPT GLPPSSYNSV
61 PPPMDEIQIA KQKAQEIAAR LLNSADAKRP RVDNGASYDY GDNKGFSSYP SEGKQMSGTV
121 PSSIPVSYGS FQGTTKKIDI PNMRVGVIIG KGGETIKYLQ LQSGAKIQVT RDMDADPNCA
181 TRTVDLTGTP DQISKAEQLI TDVLQEAEAG NTAGSGGGGG RRMGGQAGAD QFVMKIPNNK
241 VGLIIGKGGE TIKSMQAKTG ARIQVIPLHL PPGDPTPERT LQIDGITEQI EHAKQLVNEI
301 ISGENRMRNS AMGGGYPQQG GYQARPPSSW APPGGPPAQP GYGGYMQPGA YPGPPQYGQS
361 PYGSYPQQTS AGYYDQSSVP PSQQSAQGEY DYYGQQQSQQ PSSGGSSAPP TDTTGYNYYQ
421 HASGYGQAGQ GYQQDGYGAY NASQQSGYGQ AAGYDQQGGY GSTTNPSQEE DASQAAPPSS
481 AQSGQAGYGT TGQQPPAQGS TGQAGYGAPP TSQAGYSSQP AAAYNSGYGA PPPASKPPTY
541 GQSQQSPGAP GSYGSQSGYA QPAASGYGQP PAYGYGQAPQ GYGSYGGYTQ PAAGGGYSSD
601 GSAGATAGGG GGTPASQSAA PPAGPPKASP KS
//