LOCUS AEC07776.1 204 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana PITH domain protein (DUF1000) protein.
ACCESSION CP002685-3280
PROTEIN_ID AEC07776.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G25950"
/gene_synonym="F17H15.2"
/inference="Similar to RNA sequence,
EST:INSD:EL987032.1,INSD:BP630679.1,INSD:DR376495.1,
INSD:AA042656.1,INSD:DR263028.1,INSD:BP638203.1,
INSD:DR201652.1,INSD:ES022749.1,INSD:ES084491.1,
INSD:DR201656.1,INSD:DR201653.1,INSD:AU226022.1,
INSD:EL156845.1,INSD:BP591203.1,INSD:BP588238.1,
INSD:EL981281.1,INSD:BP631437.1,INSD:EL986890.1,
INSD:DR201651.1,INSD:EL235360.1,INSD:DR201655.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT005851.1,INSD:AY087923.1,INSD:AK227379.1,
INSD:BX819080.1"
/note="CONTAINS InterPro DOMAIN/s: Proteasome-interacting
thioredoxin-like domain, C-terminal (InterPro:IPR010400);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF1000) (TAIR:AT3G04780.1); Has 551
Blast hits to 551 proteins in 191 species: Archae - 0;
Bacteria - 0; Metazoa - 233; Fungi - 139; Plants - 82;
Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink)."
/db_xref="Araport:AT2G25950"
/db_xref="TAIR:AT2G25950"
intron_pos 29:0 (1/8)
intron_pos 56:0 (2/8)
intron_pos 72:2 (3/8)
intron_pos 98:2 (4/8)
intron_pos 118:0 (5/8)
intron_pos 134:2 (6/8)
intron_pos 171:0 (7/8)
intron_pos 191:2 (8/8)
BEGIN
1 MSCTHDHNCE DHECSSDWSL YKHIDLSKVS ALNESVSGSA KSVFKAWEQR LHSSGEHLES
61 NEGDPELLVF VPFTSDVKIK SISIVGGPEG TSPSKLRVFI NREGIDFSDA ESMQAVQEWE
121 LAENLQGVLE YQTRYSKFQS VGNITLHFPE SFGGDTTQIR YIGFKGEATQ LKRDVVATIV
181 YEIRPNPSDH KTKAETGGGF SQVE
//