LOCUS AEC07551.1 350 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana LJRHL1-like 1 protein.
ACCESSION CP002685-2962
PROTEIN_ID AEC07551.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="LRL1"
/locus_tag="AT2G24260"
/gene_synonym="F27D4.17"
/gene_synonym="F27D4_17"
/gene_synonym="LJRHL1-like 1"
/inference="Similar to RNA sequence,
EST:INSD:T21588.1,INSD:BP805866.1,INSD:EL075034.1,
INSD:EL082914.1,INSD:EH913998.1,INSD:ES158497.1,
INSD:ES154871.1,INSD:AI995243.1,INSD:BP613408.1,
INSD:EH803482.1,INSD:ES020427.1,INSD:AV554156.1,
INSD:AV545423.1,INSD:ES143651.1,INSD:AI994997.1,
INSD:H36500.1,INSD:BP806524.1,INSD:EL138878.1,
INSD:H36262.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK176390.1,INSD:BT026512.1,INSD:AF488599.1,
INSD:AK176370.1,INSD:BX820472.1,INSD:BX820816.1"
/note="LJRHL1-like 1 (LRL1); FUNCTIONS IN: DNA binding,
sequence-specific DNA binding transcription factor
activity; INVOLVED IN: root hair cell development,
regulation of transcription; LOCATED IN: nucleus;
EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding
domain (InterPro:IPR001092), Helix-loop-helix DNA-binding
(InterPro:IPR011598); BEST Arabidopsis thaliana protein
match is: LJRHL1-like 2 (TAIR:AT4G30980.1); Has 3384 Blast
hits to 3378 proteins in 167 species: Archae - 0; Bacteria
- 0; Metazoa - 150; Fungi - 13; Plants - 3219; Viruses -
0; Other Eukaryotes - 2 (source: NCBI BLink)."
/db_xref="Araport:AT2G24260"
/db_xref="TAIR:AT2G24260"
intron_pos 98:0 (1/5)
intron_pos 155:0 (2/5)
intron_pos 177:0 (3/5)
intron_pos 199:0 (4/5)
intron_pos 218:0 (5/5)
BEGIN
1 MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD
61 SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG GGLMNQQGQT QTQTQPQASA
121 STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA
181 SMLDEIIDYV KFLQLQVKVL SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN
241 DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301 GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA
//