LOCUS AEC07173.1 1218 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Coatomer, alpha subunit protein.
ACCESSION CP002685-2426
PROTEIN_ID AEC07173.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G21390"
/gene_synonym="F3K23.15"
/gene_synonym="F3K23_15"
/inference="Similar to RNA sequence,
EST:INSD:ES179684.1,INSD:ES011529.1,INSD:EG488518.1,
INSD:ES053587.1,INSD:AV539588.1,INSD:EL339934.1,
INSD:T45718.1,INSD:EG527555.1,INSD:EH807524.1,
INSD:AV554959.1,INSD:ES109174.1,INSD:AV543103.1,
INSD:AU237204.1,INSD:BP654633.1,INSD:EG488520.1,
INSD:AV523984.1,INSD:AV565920.1,INSD:BP647960.1,
INSD:EL339233.1,INSD:EL247799.1,INSD:AV529774.1,
INSD:EL096397.1,INSD:AA395353.1,INSD:AV524111.1,
INSD:ES073629.1,INSD:EL079117.1,INSD:EH837216.1,
INSD:AV553443.1,INSD:AV547275.1,INSD:AV547470.1,
INSD:AV561596.1,INSD:ES029731.1,INSD:ES018565.1,
INSD:AV548110.1,INSD:EL190914.1,INSD:ES168799.1,
INSD:BP833702.1,INSD:ES135013.1,INSD:EL180262.1,
INSD:ES078949.1,INSD:DR370163.1,INSD:AV547024.1,
INSD:AV556966.1,INSD:BE522887.1,INSD:AV559383.1,
INSD:EL008997.1,INSD:ES130929.1,INSD:EH917065.1,
INSD:EL073438.1,INSD:AU228233.1,INSD:EH905074.1,
INSD:CB255455.1,INSD:AV542194.1,INSD:EH946470.1,
INSD:ES099630.1,INSD:EH854902.1,INSD:EL046252.1,
INSD:AV545926.1,INSD:EL249064.1,INSD:ES124961.1,
INSD:BP658323.1,INSD:ES105970.1,INSD:ES064240.1,
INSD:EL089136.1,INSD:AI993574.1,INSD:EL229642.1,
INSD:ES123992.1,INSD:EG527329.1,INSD:EL980074.1,
INSD:EL148879.1,INSD:AV565495.1,INSD:AV529999.1,
INSD:AV544903.1,INSD:ES119892.1,INSD:R65338.1,
INSD:ES208077.1,INSD:DR368598.1,INSD:EL096324.1,
INSD:EL312276.1,INSD:EL150996.1,INSD:EG527544.1,
INSD:ES076654.1,INSD:BE526126.1,INSD:BE526515.1,
INSD:EH942311.1,INSD:EL281261.1,INSD:ES175296.1,
INSD:ES207159.1,INSD:EL111995.1,INSD:AV554896.1,
INSD:ES187360.1,INSD:ES117735.1,INSD:T43692.1,
INSD:EH851351.1,INSD:EL099751.1,INSD:EH925002.1,
INSD:ES076985.1,INSD:AV557481.1,INSD:EL237125.1,
INSD:EL013241.1,INSD:Z18042.1,INSD:AV539596.1,
INSD:AV545958.1,INSD:EG445063.1,INSD:EL049333.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK221172.1,INSD:AK228692.1"
/note="Coatomer, alpha subunit; FUNCTIONS IN: structural
molecule activity, transporter activity; INVOLVED IN:
intracellular protein transport, vesicle-mediated
transport, ER to Golgi vesicle-mediated transport; LOCATED
IN: COPI vesicle coat, CUL4 RING ubiquitin ligase complex,
membrane; EXPRESSED IN: 26 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40
repeat 2 (InterPro:IPR019782), Coatomer, WD associated
region (InterPro:IPR006692), WD40 repeat, conserved site
(InterPro:IPR019775), WD40 repeat (InterPro:IPR001680),
G-protein beta WD-40 repeat, region (InterPro:IPR020472),
WD40 repeat-like-containing domain (InterPro:IPR011046),
WD40-repeat-containing domain (InterPro:IPR017986),
WD40/YVTN repeat-like-containing domain
(InterPro:IPR015943), Coatomer, alpha subunit
(InterPro:IPR016391), WD40 repeat, subgroup
(InterPro:IPR019781), Quinoprotein amine dehydrogenase,
beta chain-like (InterPro:IPR011044), Coatomer, alpha
subunit, C-terminal (InterPro:IPR010714); BEST Arabidopsis
thaliana protein match is: Coatomer, alpha subunit
(TAIR:AT1G62020.1); Has 80927 Blast hits to 31058 proteins
in 786 species: Archae - 62; Bacteria - 8761; Metazoa -
33547; Fungi - 17467; Plants - 10193; Viruses - 0; Other
Eukaryotes - 10897 (source: NCBI BLink)."
/db_xref="Araport:AT2G21390"
/db_xref="TAIR:AT2G21390"
intron_pos 70:1 (1/2)
intron_pos 235:1 (2/2)
BEGIN
1 MLTKFETKSN RVKGLSFHPK RPWILASLHS GVIQLWDYRM GTLIDRFDEH EGPVRGVHFH
61 NSQPLFVSGG DDYKIKVWNY KTHRCLFTLL GHLDYIRTVQ FHHENPWIVS ASDDQTIRIW
121 NWQSRTCISV LTGHNHYVMC ASFHPKEDLV VSASLDQTVR VWDIGALKKK SASPADDLMR
181 FSQMNSDLFG GVDAIVKYVL EGHDRGVNWA SFHPTLPLIV SGADDRQVKL WRMNETKAWE
241 VDTLRGHMNN VSSVMFHAKQ DIIVSNSEDK SIRVWDATKR TGIQTFRREH DRFWILAVHP
301 EINLLAAGHD NGMIVFKLER ERPAFALSGD SLFYAKDRFL RYYEYSTQKD SQVIPIRRPG
361 TPSLNQSPRT LSYSPTENAV LICSDLDGGS YELYIIPKDS VGRSDVVQDA KRGTGGSAVF
421 IARNRFAVLE KSTSQVLVKN LKNEVVKKSS LPIPTDAIFY AGTGNLLCRS EDKVVIFDLQ
481 QRLVLGELQT PFVRYVVWSN DMESVALLSK HTIIIASKKL VLQCTLHETI RVKSGAWDDN
541 GVFIYTTLNH IKYCLPNGDS GIIRTLDVPI YITKVSGNTI FCLDRDGKNR AITINATEYI
601 FKLALLRKKY DHVMSMIKNS QLCGQAMIAY LQQKGFPEVA LHFVEDERIR FNLALESGNI
661 SVAVASATEI NEKDHWYRLG VEALRQGNSR IVEFAYQQTK NFERLSFLYL ITGNLDKLSK
721 LMKIAEVKNN VMGQFHNALY LGDVKERVKI LENAGHLPLA YITASVHGLT DIAERLAIEL
781 GDNVPSLPEG KTPSLLMPPS PIMCGGDWPL LRVMKGIFEG GLESANRGAV DEEEEDVEGD
841 WGEGLDKFDV DGMENTDIEA ILDGAEAGEE EDDEEGGWGL DLDLPPELDT PKASANARSS
901 TFVTPPQGMP VSQIWSQKSS LAAEQAAAGS FDTAMRLLHR QLGIKNFAPL KSMFLDLFSG
961 SHSYLRAFSS SPVVPLAIER GWSESSSPNV RGPPALVFDF SQLEAKLKSG YKATTAGKLS
1021 EALRVFLSIL QTIPLVVVES RREVDEVKEL VIIVKEYVLG LQLELKRREM KDDPVRQQEL
1081 AAYFTHCKLQ TPHLRLAYFS AMTVCYKSKN MATAAHFARS LLDTNPTIES QARTARQVMQ
1141 AAERNMTDAT TLNYDFRNPF VICGSTYVPI YKGQKDVACP YCTARFVPSQ EGNICSVCDL
1201 AVIGADASGL LCSASQVR
//