LOCUS AEC06800.1 88 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Small nuclear ribonucleoprotein family
protein protein.
ACCESSION CP002685-1917
PROTEIN_ID AEC06800.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G18740"
/gene_synonym="MSF3.12"
/gene_synonym="MSF3_12"
/inference="Similar to RNA sequence,
EST:INSD:ES109000.1,INSD:AU231021.1,INSD:DR313101.1,
INSD:ES139860.1,INSD:EG461668.1,INSD:DR313092.1,
INSD:DR313063.1,INSD:DR313078.1,INSD:EH846900.1,
INSD:EG461670.1,INSD:ES050897.1,INSD:EH853486.1,
INSD:ES106750.1,INSD:DR313098.1,INSD:DR313085.1,
INSD:DR313077.1,INSD:BP848112.1,INSD:EH937242.1,
INSD:DR313099.1,INSD:ES083588.1,INSD:AU239686.1,
INSD:EH990418.1,INSD:DR313070.1,INSD:DR313068.1,
INSD:DR313052.1,INSD:EG461782.1,INSD:EL976859.1,
INSD:DR313057.1,INSD:EH846411.1,INSD:DR313074.1,
INSD:DR313090.1,INSD:AI999743.1,INSD:DR313064.1,
INSD:DR313080.1,INSD:DR313075.1,INSD:EL290363.1,
INSD:DR373831.1,INSD:EG461778.1,INSD:EL051281.1,
INSD:DR313072.1,INSD:DR313086.1,INSD:DR313095.1,
INSD:EL297124.1,INSD:DR313076.1,INSD:EG461671.1,
INSD:DR313079.1,INSD:DR313066.1,INSD:ES162372.1,
INSD:DR313081.1,INSD:BP847067.1,INSD:EH946020.1,
INSD:DR313100.1,INSD:EL120825.1,INSD:DR313093.1,
INSD:DR313056.1,INSD:BX838280.1,INSD:DR313055.1,
INSD:Z29055.1,INSD:ES064482.1,INSD:EL260330.1,
INSD:DR313087.1,INSD:DR313054.1,INSD:DR313071.1,
INSD:EG499152.1,INSD:ES103249.1,INSD:DR313069.1,
INSD:ES078493.1,INSD:DR313061.1,INSD:BP813377.1,
INSD:EG461781.1,INSD:ES026592.1,INSD:DR313059.1,
INSD:DR313097.1,INSD:EL990715.1,INSD:EG456385.1,
INSD:DR313088.1,INSD:EG461672.1,INSD:DR313058.1,
INSD:ES076986.1,INSD:DR313083.1,INSD:ES106146.1,
INSD:DR313082.1,INSD:EL976918.1,INSD:DR313053.1,
INSD:DR313060.1,INSD:DR313073.1,INSD:DR313065.1,
INSD:DR313091.1,INSD:EL006364.1,INSD:DR313067.1,
INSD:ES119007.1,INSD:DR313051.1,INSD:BP847186.1,
INSD:EL042780.1,INSD:DR313089.1,INSD:EL084513.1,
INSD:ES131703.1,INSD:ES167721.1,INSD:EG456384.1,
INSD:DR313084.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY086369.1,INSD:BX819000.1,INSD:AK118809.1,
INSD:BT005662.1"
/note="Small nuclear ribonucleoprotein family protein;
CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein
(LSM) domain (InterPro:IPR001163), Like-Sm
ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
(InterPro:IPR006649), Like-Sm ribonucleoprotein
(LSM)-related domain (InterPro:IPR010920); BEST
Arabidopsis thaliana protein match is: Small nuclear
ribonucleoprotein family protein (TAIR:AT4G30330.1); Has
728 Blast hits to 728 proteins in 213 species: Archae -
91; Bacteria - 0; Metazoa - 243; Fungi - 159; Plants -
127; Viruses - 0; Other Eukaryotes - 108 (source: NCBI
BLink)."
/db_xref="Araport:AT2G18740"
/db_xref="TAIR:AT2G18740"
intron_pos 15:0 (1/5)
intron_pos 24:0 (2/5)
intron_pos 45:0 (3/5)
intron_pos 71:1 (4/5)
intron_pos 86:2 (5/5)
BEGIN
1 MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV
61 SIKKNTRKPL GRILLKGDNI TLMMNTGK
//