LOCUS AEC06776.1 363 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002685-1888
PROTEIN_ID AEC06776.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="emb2444"
/locus_tag="AT2G18510"
/gene_synonym="embryo defective 2444"
/gene_synonym="F24H14.14"
/gene_synonym="F24H14_14"
/inference="Similar to RNA sequence,
EST:INSD:DR341696.1,INSD:DR341675.1,INSD:DR341679.1,
INSD:ES002726.1,INSD:AV790076.1,INSD:DR341697.1,
INSD:DR341702.1,INSD:BP838544.1,INSD:EH941554.1,
INSD:DR341672.1,INSD:DR341685.1,INSD:AV821696.1,
INSD:DR341684.1,INSD:DR341678.1,INSD:DR341674.1,
INSD:AA712358.1,INSD:DR341687.1,INSD:DR341699.1,
INSD:ES112730.1,INSD:EG519137.1,INSD:AV520806.1,
INSD:BP561383.1,INSD:AV527281.1,INSD:DR341690.1,
INSD:DR341692.1,INSD:AV537627.1,INSD:DR341700.1,
INSD:ES030721.1,INSD:AV782225.1,INSD:BP782634.1,
INSD:EL983212.1,INSD:EG472431.1,INSD:DR341676.1,
INSD:DR341693.1,INSD:DR341686.1,INSD:DR341681.1,
INSD:DR341673.1,INSD:DR341691.1,INSD:EL163501.1,
INSD:DR376341.1,INSD:DR341695.1,INSD:AA605517.1,
INSD:ES050155.1,INSD:ES103314.1,INSD:BP783261.1,
INSD:DR341698.1,INSD:ES024021.1,INSD:DR341689.1,
INSD:EL987984.1,INSD:ES134321.1,INSD:ES013720.1,
INSD:BE526775.1,INSD:DR341683.1,INSD:EG519136.1,
INSD:AV518814.1,INSD:DR341694.1,INSD:DR341680.1,
INSD:DR341682.1,INSD:DR341677.1,INSD:EG472409.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY035152.1,INSD:BX820196.1,INSD:AY150466.1,
INSD:BX819560.1,INSD:BX820139.1,INSD:AY087856.1"
/note="embryo defective 2444 (emb2444); FUNCTIONS IN: RNA
binding, nucleotide binding, nucleic acid binding;
INVOLVED IN: embryo development ending in seed dormancy;
LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: poly(A) binding protein 8 (TAIR:AT1G49760.2);
Has 66829 Blast hits to 41224 proteins in 1633 species:
Archae - 50; Bacteria - 5635; Metazoa - 30219; Fungi -
10282; Plants - 12025; Viruses - 917; Other Eukaryotes -
7701 (source: NCBI BLink)."
/db_xref="Araport:AT2G18510"
/db_xref="TAIR:AT2G18510"
intron_pos 36:0 (1/8)
intron_pos 52:1 (2/8)
intron_pos 82:0 (3/8)
intron_pos 101:0 (4/8)
intron_pos 122:0 (5/8)
intron_pos 144:0 (6/8)
intron_pos 173:0 (7/8)
intron_pos 204:1 (8/8)
BEGIN
1 MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR
61 VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK ASQDKKSLDV GANLFIGNLD
121 PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS
181 NRQITVSYAY KKDTKGERHG TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP
241 FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301 QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP
361 HQG
//