LOCUS AEC06616.1 261 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Ribosomal protein S4 (RPS4A) family
protein protein.
ACCESSION CP002685-1681
PROTEIN_ID AEC06616.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G17360"
/gene_synonym="F5J6.12"
/gene_synonym="F5J6_12"
/inference="Similar to RNA sequence,
EST:INSD:EL171570.1,INSD:DR307955.1,INSD:EL118662.1,
INSD:BP637578.1,INSD:DR307971.1,INSD:ES135698.1,
INSD:EL110338.1,INSD:DR307979.1,INSD:EH836201.1,
INSD:EL062195.1,INSD:AV799853.1,INSD:ES182064.1,
INSD:EH858532.1,INSD:EH849933.1,INSD:DR307988.1,
INSD:AV549023.1,INSD:ES008698.1,INSD:DR307974.1,
INSD:EH945855.1,INSD:DR307990.1,INSD:BP631289.1,
INSD:ES076004.1,INSD:EH985931.1,INSD:EL987554.1,
INSD:ES157321.1,INSD:ES000690.1,INSD:BP645850.1,
INSD:DR307964.1,INSD:BP582191.1,INSD:ES174994.1,
INSD:EL284994.1,INSD:BP668444.1,INSD:EH865805.1,
INSD:DR307954.1,INSD:BP793092.1,INSD:EL273593.1,
INSD:EL287532.1,INSD:ES107522.1,INSD:EH894950.1,
INSD:DR307969.1,INSD:BP625511.1,INSD:EL114797.1,
INSD:ES031668.1,INSD:BP624236.1,INSD:BP801679.1,
INSD:ES005501.1,INSD:EH861402.1,INSD:EH886838.1,
INSD:ES005874.1,INSD:AV567700.1,INSD:BP830929.2,
INSD:DR307993.1,INSD:BP568394.1,INSD:Z47600.1,
INSD:BP658006.1,INSD:EH854704.1,INSD:BP561023.1,
INSD:EH844342.1,INSD:DR307976.1,INSD:DR307967.1,
INSD:EL268358.1,INSD:EL057388.1,INSD:BP595828.1,
INSD:EH819428.1,INSD:BP852615.1,INSD:DR307953.1,
INSD:EL254923.1,INSD:EH977740.1,INSD:BP804243.1,
INSD:AV783192.1,INSD:EL193744.1,INSD:AV537290.1,
INSD:ES196247.1,INSD:ES146498.1,INSD:EL974658.1,
INSD:BP566204.1,INSD:DR307985.1,INSD:EL147811.1,
INSD:DR381230.1,INSD:EL230652.1,INSD:EL117040.1,
INSD:CA781873.1,INSD:AV798746.1,INSD:DR307961.1,
INSD:BP634259.1,INSD:ES094009.1,INSD:DR307965.1,
INSD:EH991053.1,INSD:BP803861.1,INSD:ES143104.1,
INSD:ES101314.1,INSD:BP806613.1,INSD:DR307992.1,
INSD:ES106734.1,INSD:ES049316.1,INSD:AV804102.1,
INSD:EL110371.1,INSD:ES020715.1,INSD:BP638588.1,
INSD:EH820052.1,INSD:BP650835.1,INSD:EH889752.1,
INSD:AV785975.1,INSD:AV799159.1,INSD:DR307963.1,
INSD:ES199861.1,INSD:EL973733.1,INSD:DR307984.1,
INSD:ES076282.1,INSD:EH953498.1,INSD:EH916436.1,
INSD:DR307989.1,INSD:BP575944.1,INSD:CF653061.1,
INSD:DR307968.1,INSD:DR307973.1,INSD:AV518022.1,
INSD:BP580317.1,INSD:EH932271.1,INSD:ES017076.1,
INSD:F20029.1,INSD:BP588870.1,INSD:BP566840.1,
INSD:ES089499.1,INSD:F15364.1,INSD:ES094303.1,
INSD:BP647186.1,INSD:BP577252.1,INSD:AV784454.1,
INSD:ES086789.1,INSD:BP788496.1,INSD:EH884628.1,
INSD:DR307980.1,INSD:EL167825.1,INSD:DR307978.1,
INSD:ES110755.1,INSD:DR307982.1,INSD:EH938703.1,
INSD:ES167279.1,INSD:BP817542.1,INSD:EL302087.1,
INSD:ES121141.1,INSD:ES127913.1,INSD:BP571237.1,
INSD:EL994038.1,INSD:BP784573.1,INSD:BP805222.1,
INSD:ES059334.1,INSD:EL977517.1,INSD:EL011034.1,
INSD:EL978634.1,INSD:AV537012.1,INSD:BP623918.1,
INSD:EL983964.1,INSD:AV788754.1,INSD:BP637941.1,
INSD:DR371618.1,INSD:EL141329.1,INSD:ES030614.1,
INSD:ES029805.1,INSD:EL035555.1,INSD:DR307972.1,
INSD:EL107496.1,INSD:DR307957.1,INSD:DR307958.1,
INSD:ES046569.1,INSD:CB252917.1,INSD:EH807811.1,
INSD:EL972298.1,INSD:ES184990.1,INSD:EL973850.1,
INSD:ES106113.1,INSD:BP851984.1,INSD:DR307981.1,
INSD:ES149941.1,INSD:AV809991.1,INSD:DR307962.1,
INSD:AV819819.1,INSD:EL239433.1,INSD:ES124973.1,
INSD:BP638366.1,INSD:ES105946.1,INSD:ES126560.1,
INSD:DR382547.1,INSD:ES112174.1,INSD:EL088205.1,
INSD:DR307966.1,INSD:EL989460.1,INSD:EL986928.1,
INSD:BP798733.1,INSD:DR307983.1,INSD:EH919298.1,
INSD:ES064029.1,INSD:DR307970.1,INSD:EL085986.1,
INSD:ES144968.1,INSD:BP572677.1,INSD:CK117970.1,
INSD:EL072845.1,INSD:BP822351.2,INSD:BP656992.1,
INSD:AV805837.1,INSD:EH922800.1,INSD:EH913842.1,
INSD:DR307987.1,INSD:BE526981.1,INSD:DR307991.1,
INSD:BP566823.1,INSD:ES010813.1,INSD:AV822428.1,
INSD:BP634258.1,INSD:CB260679.1,INSD:BP590353.1,
INSD:ES161545.1,INSD:BP568977.1,INSD:ES178080.1,
INSD:EL155733.1,INSD:BP866184.1,INSD:ES203860.1,
INSD:DR307959.1,INSD:CB258590.1,INSD:DR307956.1,
INSD:AV536318.1,INSD:EL986704.1,INSD:ES060038.1,
INSD:AV545468.1,INSD:ES153894.1,INSD:BP815957.1,
INSD:EL287324.1,INSD:EL071048.1,INSD:DR307960.1,
INSD:DR307977.1,INSD:EH944151.1,INSD:EL058621.1,
INSD:AV827741.1,INSD:EL995656.1,INSD:BP591592.1,
INSD:ES111727.1,INSD:EL191416.1,INSD:BP573313.1,
INSD:ES120419.1,INSD:ES177381.1,INSD:DR307975.1,
INSD:EL096123.1,INSD:ES146683.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX818793.1,INSD:BX820506.1,INSD:AY035131.1,
INSD:BX818868.1,INSD:AY084230.1,INSD:AF370469.1"
/note="Ribosomal protein S4 (RPS4A) family protein;
FUNCTIONS IN: structural constituent of ribosome; INVOLVED
IN: translation; LOCATED IN: cytosolic small ribosomal
subunit, plasma membrane, chloroplast; EXPRESSED IN: 26
plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central
(InterPro:IPR013845), Ribosomal protein S4e, N-terminal,
conserved site (InterPro:IPR018199), KOW
(InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942),
Ribosomal protein S4e, N-terminal (InterPro:IPR013843),
Ribosomal protein S4e (InterPro:IPR000876); BEST
Arabidopsis thaliana protein match is: Ribosomal protein
S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1386
Blast hits to 1386 proteins in 444 species: Archae - 258;
Bacteria - 2; Metazoa - 428; Fungi - 183; Plants - 271;
Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink)."
/db_xref="Araport:AT2G17360"
/db_xref="TAIR:AT2G17360"
intron_pos 2:0 (1/4)
intron_pos 28:0 (2/4)
intron_pos 88:1 (3/4)
intron_pos 121:0 (4/4)
BEGIN
1 MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE
61 VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR LLYDTKGRFR LHSIKDEEAK
121 FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV
181 VMVTGGRNRG RVGVIKNREK HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK
241 GKGIKLTIIE EARKRLSAQQ A
//