LOCUS AEC06553.1 571 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-
binding superfamily protein protein.
ACCESSION CP002685-1580
PROTEIN_ID AEC06553.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="AMS"
/locus_tag="AT2G16910"
/gene_synonym="ABORTED MICROSPORES"
/gene_synonym="F12A24.9"
/gene_synonym="F12A24_9"
/inference="Similar to RNA sequence,
EST:INSD:AV531430.1,INSD:AV547966.1,INSD:AA586145.1,
INSD:DR365548.1,INSD:Z30479.1"
/inference="similar to RNA sequence, mRNA:INSD:AF488565.1"
/note="ABORTED MICROSPORES (AMS); FUNCTIONS IN: DNA
binding, sequence-specific DNA binding transcription
factor activity; INVOLVED IN: tapetal layer development,
regulation of transcription, pollen development; LOCATED
IN: nucleus; EXPRESSED IN: petal, leaf whorl, sepal,
flower, seed; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage, E expanded cotyledon
stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix
DNA-binding domain (InterPro:IPR001092), Helix-loop-helix
DNA-binding (InterPro:IPR011598); BEST Arabidopsis
thaliana protein match is: basic helix-loop-helix (bHLH)
DNA-binding superfamily protein (TAIR:AT3G26744.4); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="Araport:AT2G16910"
/db_xref="TAIR:AT2G16910"
intron_pos 34:2 (1/7)
intron_pos 90:2 (2/7)
intron_pos 115:0 (3/7)
intron_pos 138:0 (4/7)
intron_pos 343:0 (5/7)
intron_pos 428:0 (6/7)
intron_pos 487:0 (7/7)
BEGIN
1 MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG
61 GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ TGWLSESSEP SFMQETICTR
121 VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG
181 DIQQKGSKEE DMMNLPSSYD ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG
241 NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301 PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ
361 NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG LSCNSNVPSV KQDVDLENSN
421 DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS
481 NVFKVEKNDN EMVQAEHVRN SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH
541 HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q
//