LOCUS AEC06544.1 298 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana GCIP-interacting family protein protein.
ACCESSION CP002685-1564
PROTEIN_ID AEC06544.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G16860"
/gene_synonym="F12A24.4"
/gene_synonym="F12A24_4"
/inference="Similar to RNA sequence,
EST:INSD:DR356542.1,INSD:EG497692.1,INSD:BP621382.1,
INSD:DR340198.1,INSD:DR340204.1,INSD:DR340193.1,
INSD:DR340202.1,INSD:DR375380.1,INSD:BP617716.1,
INSD:EL998018.1,INSD:ES169801.1,INSD:ES110739.1,
INSD:EH827918.1,INSD:EH877018.1,INSD:CB261686.1,
INSD:DR340191.1,INSD:EH831585.1,INSD:AV830174.1,
INSD:ES001443.1,INSD:EL228655.1,INSD:DR340195.1,
INSD:DR340186.1,INSD:EL990249.1,INSD:DR340205.1,
INSD:DR340188.1,INSD:EL307856.1,INSD:ES149608.1,
INSD:AV564666.1,INSD:AV810488.1,INSD:DR340183.1,
INSD:DR340194.1,INSD:BP623726.1,INSD:ES007744.1,
INSD:BP779590.1,INSD:CB262440.1,INSD:DR340184.1,
INSD:EL326164.1,INSD:EH879220.1,INSD:ES131058.1,
INSD:DR340197.1,INSD:ES083582.1,INSD:DR340199.1,
INSD:EL978387.1,INSD:DR356540.1,INSD:DR340196.1,
INSD:DR340206.1,INSD:ES058811.1,INSD:AV566282.1,
INSD:BP782434.1,INSD:DR340203.1,INSD:DR340192.1,
INSD:ES023046.1,INSD:EL279970.1,INSD:ES180380.1,
INSD:DR340200.1,INSD:ES094797.1,INSD:DR340187.1,
INSD:DR336283.1,INSD:DR340189.1,INSD:DR340185.1,
INSD:EL115468.1,INSD:DR382951.1,INSD:DR340190.1,
INSD:BP604506.1,INSD:DR340201.1,INSD:BP613103.1,
INSD:BP629232.1,INSD:DR375675.1,INSD:EG497691.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY087367.1,INSD:AY099601.1,INSD:AY128842.1"
/note="GCIP-interacting family protein; CONTAINS InterPro
DOMAIN/s: mRNA splicing factor SYF2 (InterPro:IPR013260);
Has 2586 Blast hits to 2013 proteins in 293 species:
Archae - 27; Bacteria - 123; Metazoa - 700; Fungi - 265;
Plants - 138; Viruses - 7; Other Eukaryotes - 1326
(source: NCBI BLink)."
/db_xref="Araport:AT2G16860"
/db_xref="TAIR:AT2G16860"
intron_pos 42:1 (1/4)
intron_pos 98:0 (2/4)
intron_pos 178:1 (3/4)
intron_pos 224:0 (4/4)
BEGIN
1 MVSERRVHPD CINASNPYHE CVEYCFKKIA EAKARFEKQN TGLAKVHEQT REPLDDKRIE
61 EDSSEEEEEE EDNQEPQVDV TQLTGRQKKL FELRLKMNEA RKSNQTDVGS EKKKMEAPTE
121 TKGISKQKWL EGRKKKIGKL LDANGLDMTQ AYMLDTQEAA ESKYKKWEKE PTPAGWDVFN
181 QKTLYNAYKK RTKNIQVDLE EYNRMRAADP EFYREASSLQ YGKAPKTSQD KIDKMAKELL
241 DREQKRQEFS RRRKFREEKD IDSINDRNEH FNKKIERAFG KYTLEIKNNL ERGTALPD
//