LOCUS AEC06537.1 415 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Transducin family protein / WD-40
repeat family protein protein.
ACCESSION CP002685-1553
PROTEIN_ID AEC06537.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="MSI2"
/locus_tag="AT2G16780"
/gene_synonym="MSI02"
/gene_synonym="MULTICOPY SUPPRESSOR OF IRA1 2"
/gene_synonym="NFC02"
/gene_synonym="NFC2"
/gene_synonym="NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP
C 2"
/gene_synonym="T24I21.19"
/gene_synonym="T24I21_19"
/inference="Similar to RNA sequence,
EST:INSD:AV533518.1,INSD:EL967166.1,INSD:DR219283.1,
INSD:BX841266.1,INSD:ES003573.1,INSD:ES018916.1,
INSD:Z26400.1,INSD:ES043737.1,INSD:ES182165.1,
INSD:DR219281.1,INSD:EL996355.1,INSD:BX836790.1,
INSD:ES139647.1,INSD:EL079930.1,INSD:EL975974.1,
INSD:DR219282.1,INSD:DR219286.1,INSD:EL993074.1,
INSD:ES114898.1,INSD:ES158553.1,INSD:ES041421.1,
INSD:EH816168.1,INSD:BP633150.1,INSD:EH798231.1,
INSD:AV801789.1,INSD:DR219285.1,INSD:EH906894.1,
INSD:BE527501.1,INSD:DR219287.1,INSD:ES092206.1,
INSD:EL025573.1,INSD:BP837721.1,INSD:BP823523.1,
INSD:AA605543.1,INSD:ES062749.1,INSD:AV827815.1,
INSD:CK120400.1,INSD:DR219280.1,INSD:EL993922.1,
INSD:ES202715.1,INSD:AA712922.1,INSD:DR219284.1,
INSD:ES042214.1,INSD:EL984732.1,INSD:ES032164.1,
INSD:DR376695.1,INSD:AV535579.1,INSD:ES157609.1,
INSD:EL273084.1,INSD:ES179825.1,INSD:CK118827.1,
INSD:ES073211.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY088045.1,INSD:AY056814.1,INSD:AF016847.1,
INSD:BX820147.1"
/note="MULTICOPY SUPPRESSOR OF IRA1 2 (MSI2); CONTAINS
InterPro DOMAIN/s: Histone-binding protein RBBP4
(InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782),
WD40 repeat, conserved site (InterPro:IPR019775), WD40
repeat (InterPro:IPR001680), G-protein beta WD-40 repeat,
region (InterPro:IPR020472), WD40 repeat-like-containing
domain (InterPro:IPR011046), WD40-repeat-containing domain
(InterPro:IPR017986), WD40/YVTN repeat-like-containing
domain (InterPro:IPR015943), WD40 repeat, subgroup
(InterPro:IPR019781); BEST Arabidopsis thaliana protein
match is: Transducin family protein / WD-40 repeat family
protein (TAIR:AT4G35050.1); Has 43623 Blast hits to 25846
proteins in 733 species: Archae - 34; Bacteria - 4140;
Metazoa - 17646; Fungi - 10305; Plants - 5712; Viruses -
0; Other Eukaryotes - 5786 (source: NCBI BLink)."
/db_xref="Araport:AT2G16780"
/db_xref="TAIR:AT2G16780"
intron_pos 107:0 (1/5)
intron_pos 215:0 (2/5)
intron_pos 263:0 (3/5)
intron_pos 304:2 (4/5)
intron_pos 336:2 (5/5)
BEGIN
1 MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF
61 GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ DPFIPKVEIR QRIRVDGEVN
121 RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK
181 EGYLLSGSQD QKICLWDVSA TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG
241 RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301 SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG
361 GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD EEDAEDIKED ITQQS
//