LOCUS AEC06438.1 361 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana peptidyl-prolyl cis-trans isomerase
/ cyclophilin-40 (CYP40) / rotamase protein.
ACCESSION CP002685-1428
PROTEIN_ID AEC06438.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="SQN"
/locus_tag="AT2G15790"
/gene_synonym="CYCLOPHILIN 40"
/gene_synonym="CYCLOPHILIN-40"
/gene_synonym="CYP40"
/gene_synonym="F19G14.21"
/gene_synonym="F19G14_21"
/gene_synonym="SQUINT"
/inference="Similar to RNA sequence,
EST:INSD:BP562738.2,INSD:EG438286.1,INSD:ES097544.1,
INSD:EG438111.1,INSD:ES178973.1,INSD:BP789992.1,
INSD:CF773141.1,INSD:ES088223.1,INSD:BP572261.1,
INSD:EG438228.1,INSD:ES093173.1,INSD:AU226583.1,
INSD:EG438110.1,INSD:AI998037.1,INSD:ES167521.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT028999.1,INSD:AY026065.1"
/note="SQUINT (SQN); CONTAINS InterPro DOMAIN/s:
Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl
cis-trans isomerase, cyclophilin-type
(InterPro:IPR002130), Tetratricopeptide-like helical
(InterPro:IPR011990), Tetratricopeptide TPR2
(InterPro:IPR013105), Peptidyl-prolyl cis-trans isomerase,
cyclophilin-type, conserved site (InterPro:IPR020892),
Tetratricopeptide repeat-containing (InterPro:IPR013026),
Tetratricopeptide repeat (InterPro:IPR019734); BEST
Arabidopsis thaliana protein match is: Cyclophilin-like
peptidyl-prolyl cis-trans isomerase family protein
(TAIR:AT3G63400.3); Has 20219 Blast hits to 19939 proteins
in 2706 species: Archae - 114; Bacteria - 6925; Metazoa -
4764; Fungi - 1760; Plants - 1912; Viruses - 4; Other
Eukaryotes - 4740 (source: NCBI BLink)."
/db_xref="Araport:AT2G15790"
/db_xref="TAIR:AT2G15790"
intron_pos 58:0 (1/7)
intron_pos 225:0 (2/7)
intron_pos 254:1 (3/7)
intron_pos 272:0 (4/7)
intron_pos 307:0 (5/7)
intron_pos 332:1 (6/7)
intron_pos 345:0 (7/7)
BEGIN
1 MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR
61 FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH ERKGMLSMAN SGPNTNGSQF
121 FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG
181 ICDFFKDGDV YPDWPIDLNE SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR
241 YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301 LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF
361 V
//