LOCUS AEC06230.1 1724 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana chromatin remodeling 5 protein.
ACCESSION CP002685-1162
PROTEIN_ID AEC06230.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="CHR5"
/locus_tag="AT2G13370"
/gene_synonym="chromatin remodeling 5"
/gene_synonym="F14O4.6"
/gene_synonym="F14O4_6"
/inference="Similar to RNA sequence,
EST:INSD:BP616500.1,INSD:ES012818.1,INSD:AA651151.1,
INSD:EL968622.1,INSD:AU228962.1,INSD:EL967152.1,
INSD:BP598227.1,INSD:AU237862.1,INSD:ES215296.1,
INSD:ES105713.1,INSD:ES166543.1,INSD:BP605751.1,
INSD:ES142824.1,INSD:ES008202.1,INSD:CB518232.1,
INSD:AV554765.1,INSD:BP810682.1,INSD:BP614652.1,
INSD:CB518233.1,INSD:AV522628.1"
/inference="similar to RNA sequence, mRNA:INSD:AK221299.1"
/note="chromatin remodeling 5 (CHR5); FUNCTIONS IN:
chromatin binding, helicase activity, DNA binding, nucleic
acid binding, ATP binding; INVOLVED IN: chromatin assembly
or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED
IN: 26 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Chromo domain
(InterPro:IPR000953), SNF2-related (InterPro:IPR000330),
Homeodomain-like (InterPro:IPR009057), DEAD-like helicase,
N-terminal (InterPro:IPR014001), Chromo domain-like
(InterPro:IPR016197), DNA/RNA helicase, C-terminal
(InterPro:IPR001650), Helicase, superfamily 1/2,
ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis
thaliana protein match is: chromatin remodeling factor
CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to
28045 proteins in 2467 species: Archae - 189; Bacteria -
9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses
- 447; Other Eukaryotes - 10320 (source: NCBI BLink)."
/db_xref="Araport:AT2G13370"
/db_xref="TAIR:AT2G13370"
intron_pos 249:1 (1/29)
intron_pos 272:0 (2/29)
intron_pos 412:0 (3/29)
intron_pos 487:0 (4/29)
intron_pos 515:0 (5/29)
intron_pos 535:0 (6/29)
intron_pos 569:2 (7/29)
intron_pos 587:0 (8/29)
intron_pos 608:1 (9/29)
intron_pos 639:2 (10/29)
intron_pos 669:0 (11/29)
intron_pos 714:0 (12/29)
intron_pos 778:0 (13/29)
intron_pos 800:2 (14/29)
intron_pos 832:0 (15/29)
intron_pos 873:2 (16/29)
intron_pos 895:0 (17/29)
intron_pos 964:0 (18/29)
intron_pos 1045:0 (19/29)
intron_pos 1082:0 (20/29)
intron_pos 1111:0 (21/29)
intron_pos 1171:0 (22/29)
intron_pos 1198:0 (23/29)
intron_pos 1280:0 (24/29)
intron_pos 1332:0 (25/29)
intron_pos 1391:1 (26/29)
intron_pos 1452:0 (27/29)
intron_pos 1570:0 (28/29)
intron_pos 1601:1 (29/29)
BEGIN
1 MAFFRNYSND TVSHNVLDEN EERQNAATFQ SSPLNEDVDG TYSERGFDMN MDVQYQSDPE
61 PGCSIRQPNE TAVDNVADPV DSHYQSSTKR LGVTGRWGST FWKDCQPMGQ REGSDPAKDS
121 QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY
181 EQDEDNQSDH VHYKGYSNPT NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD
241 MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
301 KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG
361 TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED IDDGKNRKNQ KDDIEEEDAD
421 VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT
481 LSDLQNLSGF KKVLNYTKKV TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA
541 DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
601 QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS
661 VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM NIIVYVGTRA SREVCQQYEF
721 YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS
781 TKNKLLITGT PLQNSVEELW ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR
841 PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
901 VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI
961 FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH FNAPASDDFC FLLSTRAGGL
1021 GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK
1081 MVLDHLVIQK LNAEGRLEKR ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS
1141 MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201 APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV
1261 RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV EAAPEEAQVE LFDALIDGCK
1321 ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS
1381 NWSKGCGWNQ IDDARLLLGI LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN
1441 LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501 STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT
1561 TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD RMTMRLWNYV STFSNLSGDR
1621 LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK
1681 RRRRTENDVQ TERPTITNSN SLGILGPGPL DRSHRARQTG FPPR
//