LOCUS AEC06005.2 1091 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana binding protein protein.
ACCESSION CP002685-865
PROTEIN_ID AEC06005.2
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="ELF8"
/locus_tag="AT2G06210"
/gene_synonym="EARLY FLOWERING 8"
/gene_synonym="F5K7.3"
/gene_synonym="F5K7_3"
/gene_synonym="VERNALIZATION INDEPENDENCE 6"
/gene_synonym="VIP6"
/inference="similar to RNA sequence,
EST:INSD:EH902230.1,INSD:EL092963.1,INSD:ES028858.1,
INSD:ES118094.1,INSD:ES194579.1,INSD:ES087072.1,
INSD:ES097105.1,INSD:AV803993.1,INSD:EL080046.1,
INSD:T42916.1,INSD:ES159990.1,INSD:EL095997.1,
INSD:ES095204.1,INSD:ES122459.1,INSD:EL129524.1,
INSD:AV829030.1,INSD:EL150294.1,INSD:BE521808.1,
INSD:ES205533.1,INSD:EL230208.1,INSD:ES161089.1,
INSD:EH815093.1,INSD:EH819393.1,INSD:EL270235.1,
INSD:T46289.1,INSD:EL023579.1"
/note="EARLY FLOWERING 8 (ELF8); FUNCTIONS IN: binding;
INVOLVED IN: positive regulation of transcription,
DNA-dependent, histone methylation, negative regulation of
flower development; LOCATED IN: membrane; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1
(InterPro:IPR001440), Tetratricopeptide-like helical
(InterPro:IPR011990), Tetratricopeptide TPR2
(InterPro:IPR013105), Tetratricopeptide repeat-containing
(InterPro:IPR013026), Tetratricopeptide repeat
(InterPro:IPR019734); BEST Arabidopsis thaliana protein
match is: Tetratricopeptide repeat (TPR)-like superfamily
protein (TAIR:AT3G04240.1); Has 39956 Blast hits to 25035
proteins in 1980 species: Archae - 1189; Bacteria - 13149;
Metazoa - 9789; Fungi - 2497; Plants - 1315; Viruses -
192; Other Eukaryotes - 11825 (source: NCBI BLink)."
/db_xref="Araport:AT2G06210"
/db_xref="TAIR:AT2G06210"
intron_pos 48:0 (1/23)
intron_pos 70:1 (2/23)
intron_pos 135:1 (3/23)
intron_pos 169:0 (4/23)
intron_pos 187:0 (5/23)
intron_pos 225:2 (6/23)
intron_pos 247:0 (7/23)
intron_pos 318:2 (8/23)
intron_pos 348:0 (9/23)
intron_pos 381:2 (10/23)
intron_pos 412:2 (11/23)
intron_pos 435:2 (12/23)
intron_pos 466:2 (13/23)
intron_pos 553:2 (14/23)
intron_pos 580:2 (15/23)
intron_pos 633:2 (16/23)
intron_pos 665:2 (17/23)
intron_pos 699:2 (18/23)
intron_pos 735:2 (19/23)
intron_pos 810:2 (20/23)
intron_pos 899:2 (21/23)
intron_pos 923:2 (22/23)
intron_pos 1034:2 (23/23)
BEGIN
1 MASVYIPVQN SEEEVRVVLD QLPRDASDIL DILKAEQAPL DLWLIIAREY FKQGKIEQFR
61 QILEEGSSSD IDEYYADVKY ERIAILNALG AYYSYLGKTE TKNREKEEQF ISATRYYNKA
121 SRIDMHEPST WVGKGQLLLA KGEIDNALQA FKIVLDTAPD NVPALLGQAS VEFNRGRFSE
181 SLQLYKRALQ VFPGCPAAVR LGIGXCRYKL GQLDKARQAF DRVLQLDPDN VEALVALGIM
241 DLQANDSIGM RKGMDRMQQA FEIYPYCASA LNYLANHFFF TGQHFLVEQL TETALAVTTH
301 GPTKSHSFYN LARSYHSKGD FEKAGMYYMA AIKETNNNPH EFVFPYFGLG QVQLKLGELK
361 GSVFNFEKVL EVYPDNCETL KALGHLYTQL GQNEKALEYM RKATKLDPRD AQAFVGLGEL
421 LISSDTGAAL DAFKMARTLM KKGGQEVPIE VLNDIGALHF EREEFESALE NFKEALGDGI
481 WISFLDEKEN LEQTGVSVLG YKDTGIFHRL IESGHSVDVP WNKVTTLFNL ARLLEQIHKT
541 EAATFMYRLI LFKYPGYIDA YLRLAASAKA QNNLPLAIEL VNEALKVDDK NPNALSLLGE
601 LELKNDDWVK AKETFRAAND ATDGKDSYAI LSLGNWNYFA AMRNEKRNPK LEATHLEKAK
661 ELYTKVLTQH NSNMYAANGS GIVLAEKGQF DIAKDVFTQV QEAASGSVFL QMPDVWVNLA
721 HVYFAQGNFA LTVKMYQNCL RKFFYNTDSQ ILLYLARTHY EAEQWQECKK TLLRAIHLTP
781 SNYTFRFDLG AVMQKSSSST LQKKKRTADE VRSTVAEAEN AVRVFTQLSA ASDLHVHGFD
841 SKKIQTHVQY CSHLLEAAKV HREAAEQEEL QNRQRLEVAR QAALAEEARR KAEEQRKYQL
901 EKRKQEEELR RLKQEEEKFQ RIKEQWKSST PGSNKRKDRV EDDDGESKPS ERRRKKGGKR
961 RKKDKSSRAR HYEDDEEEAA TMDDHNEVED EDANTNYNRE DEMTTQEAEE PVDDDAHDLL
1021 AAAGLEDPDV DDDEVPTSGV RRRRALSSSD EEGELMEESH PNSSPQKEKE ESNGEAGDPN
1081 MEEEEEEEEA N
//