LOCUS AEC05802.1 420 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana TRAF-like family protein protein.
ACCESSION CP002685-586
PROTEIN_ID AEC05802.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G04170"
/gene_synonym="T16B23.2"
/gene_synonym="T16B23_2"
/inference="Similar to RNA sequence,
EST:INSD:EG432538.1,INSD:EG430379.1,INSD:T42747.1,
INSD:EG430426.1,INSD:EG432531.1,INSD:EG430489.1,
INSD:EG432512.1,INSD:EG432549.1,INSD:EG432513.1,
INSD:EG426575.1,INSD:EG426570.1,INSD:EG432533.1,
INSD:EG432550.1,INSD:EG432514.1,INSD:EG432522.1,
INSD:EG432517.1,INSD:EG430422.1,INSD:EG432548.1,
INSD:EG432515.1,INSD:EG430503.1,INSD:BP780093.1,
INSD:EG432553.1,INSD:EG432554.1,INSD:EG432520.1,
INSD:EG430425.1,INSD:EG432559.1,INSD:EG426573.1,
INSD:EG426572.1,INSD:EG430440.1,INSD:EG432541.1,
INSD:EG430482.1,INSD:EG432537.1,INSD:EG430424.1,
INSD:EG432555.1,INSD:EG432527.1,INSD:EG430488.1,
INSD:AA712407.1,INSD:EG430423.1,INSD:EG432552.1,
INSD:EG432525.1,INSD:EG432536.1,INSD:EG430484.1,
INSD:AA597772.1,INSD:EG432539.1,INSD:EG432558.1,
INSD:EG430493.1,INSD:EG432526.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY649317.1,INSD:BX819599.1"
/note="TRAF-like family protein; CONTAINS InterPro
DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH
(InterPro:IPR002083); BEST Arabidopsis thaliana protein
match is: TRAF-like family protein (TAIR:AT5G26280.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink)."
/db_xref="Araport:AT2G04170"
/db_xref="TAIR:AT2G04170"
intron_pos 122:1 (1/5)
intron_pos 161:2 (2/5)
intron_pos 218:1 (3/5)
intron_pos 311:2 (4/5)
intron_pos 367:1 (5/5)
BEGIN
1 MNRGGCGGGP GRGGRGFGGR GGGPGFGPGG PGFGPGGPGF GPGGPGFGPG GPGFGGRGPR
61 GPGFGPRGPG PWSGPRGPRP GGGGGPGPGP WSGPRGPRPG GGGGPGSGCG SGTGGGNQGQ
121 GGMWRDERPS NKILTITSFS VIKGRGEPYE SSVFEAGGYK WRLVLYVNGN QNDGGNNHIS
181 LYVRIEETES LPKGWEVNVE LKLFVYNGKQ RKYLIVKDGI VKRYNDAKKE WGYGKLIPLT
241 TFLDTNEGYL EQDIASFGAE IFSGTAVQVQ EKVTFISNPP NNVFTWKILH FSNLEDKFYY
301 SDDFLVEDRY WRLGFNPKGT GDGRSQAIPI FLYAQGHKPN AVATNTWGAV NLRLKNQRSS
361 NHAQIYSAAW YPTRSDYGVG VNTIISLAEF NDASKGYSVN DSIIFEAEMV KVSVTNIVPI
//