LOCUS AEC05760.1 99 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Small nuclear ribonucleoprotein family
protein protein.
ACCESSION CP002685-534
PROTEIN_ID AEC05760.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="EMB2816"
/locus_tag="AT2G03870"
/gene_synonym="EMBRYO DEFECTIVE 2816"
/gene_synonym="LSM7"
/gene_synonym="SM-like 7"
/gene_synonym="T18C20.7"
/gene_synonym="T18C20_7"
/inference="Similar to RNA sequence,
EST:INSD:EL045641.1,INSD:ES131475.1,INSD:EH958270.1,
INSD:ES211772.1,INSD:ES065131.1,INSD:ES071536.1,
INSD:DR245151.1,INSD:DR245144.1,INSD:EL224500.1,
INSD:DR245140.1,INSD:EG504854.1,INSD:DR245152.1,
INSD:DR245149.1,INSD:DR245154.1,INSD:ES211307.1,
INSD:ES022493.1,INSD:EL165479.1,INSD:EH902838.1,
INSD:DR245150.1,INSD:BP821230.1,INSD:EH890794.1,
INSD:DR257931.1,INSD:ES103416.1,INSD:BP798964.1,
INSD:EH925162.1,INSD:EL244918.1,INSD:DR372603.1,
INSD:DR245142.1,INSD:DR245148.1,INSD:EH821029.1,
INSD:EL269484.1,INSD:ES186947.1,INSD:ES131212.1,
INSD:EL989588.1,INSD:DR245153.1,INSD:ES176100.1,
INSD:EL226541.1,INSD:BP859083.1,INSD:DR245155.1,
INSD:ES043120.1,INSD:DR245138.1,INSD:BP633860.1,
INSD:EL260666.1,INSD:ES114696.1,INSD:DR245137.1,
INSD:DR245156.1,INSD:AU235331.1,INSD:BP634376.1,
INSD:EH986456.1,INSD:EL212038.1,INSD:DR245157.1,
INSD:DR245146.1,INSD:ES192716.1,INSD:BP799604.1,
INSD:DR245136.1,INSD:ES005848.1,INSD:EL996231.1,
INSD:EL001392.1,INSD:BP635998.1,INSD:DR245143.1,
INSD:DR245135.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX821525.1,INSD:BX821691.1,INSD:AK227358.1"
/note="Small nuclear ribonucleoprotein family protein;
CONTAINS InterPro DOMAIN/s: U6 snRNA-associated Sm-like
protein LSm7 (InterPro:IPR017132), Like-Sm
ribonucleoprotein (LSM) domain (InterPro:IPR001163),
Like-Sm ribonucleoprotein (LSM) domain,
eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm
ribonucleoprotein (LSM)-related domain
(InterPro:IPR010920); BEST Arabidopsis thaliana protein
match is: probable small nuclear ribonucleoprotein G
(TAIR:AT2G23930.1); Has 1450 Blast hits to 1450 proteins
in 289 species: Archae - 222; Bacteria - 0; Metazoa - 489;
Fungi - 323; Plants - 216; Viruses - 0; Other Eukaryotes -
200 (source: NCBI BLink)."
/db_xref="Araport:AT2G03870"
/db_xref="TAIR:AT2G03870"
intron_pos 2:0 (1/4)
intron_pos 29:1 (2/4)
intron_pos 53:1 (3/4)
intron_pos 71:0 (4/4)
BEGIN
1 MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT
61 TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
//