LOCUS AEC05754.1 516 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana nonsense-mediated mRNA decay NMD3
family protein protein.
ACCESSION CP002685-527
PROTEIN_ID AEC05754.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="NMD3"
/locus_tag="AT2G03820"
/gene_synonym="AtNMD3"
/gene_synonym="Nonsense-Mediated mRNA Decay 3"
/gene_synonym="T18C20.2"
/gene_synonym="T18C20_2"
/inference="Similar to RNA sequence,
EST:INSD:EH818460.1,INSD:EL203058.1,INSD:AV830923.1,
INSD:BP784711.1,INSD:AV813911.1,INSD:BP781863.1,
INSD:EL204280.1,INSD:BP788096.1,INSD:EL022208.1,
INSD:AV817903.1,INSD:EL228260.1,INSD:BP592250.1,
INSD:BP857103.1,INSD:EH876049.1,INSD:EL220524.1,
INSD:EL106730.1,INSD:BP638235.1,INSD:BP604409.1,
INSD:EL017054.1,INSD:EG426241.1,INSD:EH878566.1,
INSD:BP850713.1,INSD:ES136280.1,INSD:EH875475.1,
INSD:ES074390.1,INSD:ES189342.1,INSD:EL282959.1,
INSD:EH890168.1,INSD:EL144075.1,INSD:ES132149.1,
INSD:AV536706.1,INSD:AV826455.1,INSD:EG481809.1,
INSD:EL302775.1,INSD:AV547809.1,INSD:EH955701.1,
INSD:BP790915.1,INSD:DR358850.1,INSD:EH870209.1,
INSD:ES192655.1,INSD:EL969691.1,INSD:BP590453.1,
INSD:BP671693.1,INSD:ES097109.1,INSD:ES017675.1,
INSD:BP797255.1,INSD:ES152941.1,INSD:BP666552.1,
INSD:BP799207.1,INSD:Z17914.1,INSD:EH876878.1,
INSD:BP782585.1,INSD:ES063945.1,INSD:EL015187.1,
INSD:BP780436.1,INSD:EL289521.1,INSD:T43245.1,
INSD:BP593355.1,INSD:BP780168.1,INSD:EL325081.1,
INSD:AI995693.1,INSD:BP826447.1,INSD:EH805915.1,
INSD:EL003051.1,INSD:EL246806.1,INSD:EL170535.1,
INSD:EL174038.1,INSD:BP778770.1,INSD:EH834968.1,
INSD:EL285372.1,INSD:EH835730.1,INSD:BP604275.1,
INSD:BP831632.1,INSD:BP784746.1,INSD:EH795826.1,
INSD:BP590501.1,INSD:EL132260.1,INSD:ES044447.1,
INSD:BP845065.1,INSD:ES059572.1,INSD:BP604182.1,
INSD:AV831807.1,INSD:EL985821.1,INSD:ES119033.1,
INSD:BP866965.1,INSD:EL128162.1,INSD:EG426252.1,
INSD:AA395249.1,INSD:BP855712.1,INSD:EG481810.1,
INSD:AV795002.1,INSD:BP860562.1,INSD:EL208666.1,
INSD:BP663085.1,INSD:BP612242.1,INSD:EH902312.1,
INSD:BP856606.1,INSD:BP784444.1,INSD:EH823564.1,
INSD:ES045327.1,INSD:EL074409.1,INSD:BP594927.1,
INSD:BP865041.1,INSD:EH979856.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY099778.1,INSD:AY056240.1,INSD:AY128878.1"
/note="nonsense-mediated mRNA decay NMD3 family protein;
CONTAINS InterPro DOMAIN/s: NMD3 (InterPro:IPR007064); Has
480 Blast hits to 466 proteins in 217 species: Archae -
17; Bacteria - 0; Metazoa - 145; Fungi - 138; Plants - 63;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink)."
/db_xref="Araport:AT2G03820"
/db_xref="TAIR:AT2G03820"
BEGIN
1 MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP
61 ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN AEFVWTEPHS KRIKVKLTVQ
121 AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI
181 LRHDAASRAI RIQQVDQGID FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY
241 NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301 RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT
361 HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE AILIKKCYEE QRERKQKKSR
421 NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM
481 TDGEGAPSVP IEELLADLDL SFEEEDDDDE DDMAAE
//