LOCUS AEC05544.1 439 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana indeterminate(ID)-domain 4 protein.
ACCESSION CP002685-216
PROTEIN_ID AEC05544.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="IDD4"
/locus_tag="AT2G02080"
/gene_synonym="AtIDD4"
/gene_synonym="F5O4.15"
/gene_synonym="F5O4_15"
/gene_synonym="indeterminate(ID)-domain 4"
/inference="Similar to RNA sequence,
EST:INSD:BG459288.1,INSD:Z29944.1,INSD:EG525021.1,
INSD:EL097773.1,INSD:Z26349.1,INSD:EG488029.1,
INSD:ES119786.1,INSD:EG528705.1,INSD:ES032232.1,
INSD:EG490787.1,INSD:EG481422.1,INSD:BG459275.1,
INSD:Z26377.1,INSD:EL105505.1,INSD:EH829901.1,
INSD:ES206303.1,INSD:ES117376.1,INSD:EG522016.1,
INSD:EG464085.1,INSD:ES100819.1,INSD:T04539.1,
INSD:ES180833.1,INSD:EG488041.1,INSD:EG525022.1,
INSD:AV521337.1,INSD:EG481421.1,INSD:AU229774.1,
INSD:ES073642.1,INSD:ES189124.1,INSD:EG487907.1,
INSD:ES163766.1,INSD:DR749866.1,INSD:ES054882.1,
INSD:ES020006.1,INSD:EL323438.1,INSD:EG487896.1,
INSD:EL058075.1,INSD:DR749865.1"
/inference="similar to RNA sequence, mRNA:INSD:BX819781.1"
/note="indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN:
sequence-specific DNA binding transcription factor
activity; LOCATED IN: intracellular; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like
(InterPro:IPR015880), Zinc finger, C2H2-type
(InterPro:IPR007087), Zinc finger, double-stranded RNA
binding (InterPro:IPR022755); BEST Arabidopsis thaliana
protein match is: C2H2-like zinc finger protein
(TAIR:AT1G14580.2); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="Araport:AT2G02080"
/db_xref="TAIR:AT2G02080"
intron_pos 119:2 (1/1)
BEGIN
1 MATNRFICDV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EVKRKVYLCP EPTCVHHDPS
61 RALGDLTGIK KHYYRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTKEYR CDCGTIFSRR
121 DSYITHRAFC DALIQETARN PTVSFTSMTA ASSGVGSGGI YGRLGGGSAL SHHHLSDHPN
181 FGFNPLVGYN LNIASSDNRR DFIPQSSNPN FLIQSASSQG MLNTTPNNNN QSFMNQHGLI
241 QFDPVDNINL KSSGTNNSFF NLGFFQENTK NSETSLPSLY STDVLVHHRE ENLNAGSNVS
301 ATALLQKATQ MGSVTSNDPS ALFRGLASSS NSSSVIANHF GGGRIMENDN NGNLQGLMNS
361 LAAVNGGGGS GGSIFDVQFG DNGNMSGSDK LTLDFLGVGG MVRNVNRGGG GGGRGSARGG
421 VSLDGEAKFP EQNYPFGRG
//