LOCUS AEC05542.1 602 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana indeterminate(ID)-domain 5 protein.
ACCESSION CP002685-210
PROTEIN_ID AEC05542.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="IDD5"
/locus_tag="AT2G02070"
/gene_synonym="AtIDD5"
/gene_synonym="F5O4.16"
/gene_synonym="F5O4_16"
/gene_synonym="indeterminate(ID)-domain 5"
/inference="Similar to RNA sequence,
EST:INSD:EH935852.1,INSD:BP590634.1,INSD:EL173742.1,
INSD:ES094877.1,INSD:EL243214.1,INSD:EL155562.1,
INSD:EL336079.1,INSD:EL100344.1,INSD:EL212604.1,
INSD:BP612040.1,INSD:EH800230.1,INSD:EL327598.1,
INSD:BP653294.1,INSD:EL128747.1,INSD:BE524940.1,
INSD:ES038035.1,INSD:EH982565.1,INSD:AV534606.1,
INSD:AV802654.1,INSD:EH867192.1,INSD:EL315533.1,
INSD:AV795027.1,INSD:BP588847.1,INSD:BP600608.1,
INSD:CB262611.1,INSD:EL188242.1,INSD:BP587833.1,
INSD:ES192661.1,INSD:EH798399.1,INSD:ES082867.1,
INSD:EL156206.1,INSD:EG522681.1,INSD:EL337137.1,
INSD:EL094933.1,INSD:BP604223.1,INSD:EG472227.1,
INSD:AV791963.1,INSD:EH809790.1,INSD:BP585947.1,
INSD:EL331873.1,INSD:BE524036.1,INSD:BP621541.1,
INSD:EG522680.1,INSD:BP618276.1,INSD:EH836306.1,
INSD:ES111472.1,INSD:EH916970.1,INSD:BP789913.1,
INSD:EG470856.1,INSD:ES175559.1,INSD:EH962876.1,
INSD:AV825686.1,INSD:BP866017.1,INSD:EL151231.1,
INSD:ES154985.1,INSD:EH901885.1,INSD:EL207567.1,
INSD:EL034720.1,INSD:EL004461.1,INSD:BP780891.1,
INSD:EH929614.1,INSD:AV826459.1,INSD:EL142745.1,
INSD:EH896213.1,INSD:EH978258.1,INSD:EH979184.1,
INSD:ES065934.1,INSD:EH923244.1,INSD:BP585809.1,
INSD:EH911420.1,INSD:ES086889.1,INSD:BG459512.1,
INSD:AV532782.1,INSD:EL303462.1,INSD:EL090631.1,
INSD:BP830111.1,INSD:EL231229.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY081314.1,INSD:AY056174.1,INSD:BT001215.1,
INSD:AJ621495.1"
/note="indeterminate(ID)-domain 5 (IDD5); FUNCTIONS IN:
sequence-specific DNA binding transcription factor
activity, zinc ion binding, nucleic acid binding; INVOLVED
IN: regulation of transcription; LOCATED IN:
intracellular, chloroplast; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Zinc finger, C2H2-like
(InterPro:IPR015880), Zinc finger, C2H2-type
(InterPro:IPR007087); BEST Arabidopsis thaliana protein
match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1);
Has 61158 Blast hits to 25844 proteins in 587 species:
Archae - 8; Bacteria - 480; Metazoa - 52168; Fungi - 1154;
Plants - 982; Viruses - 10; Other Eukaryotes - 6356
(source: NCBI BLink)."
/db_xref="Araport:AT2G02070"
/db_xref="TAIR:AT2G02070"
intron_pos 62:1 (1/2)
intron_pos 194:2 (2/2)
BEGIN
1 MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ APLPPLEAPP QKKKRNQPRT
61 PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSTKEVKRK
121 VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG
181 TKEYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA
241 SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301 HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT
361 SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG LFPNNLMSSA DRISSGSVPS
421 LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE
481 NESNLQDLMN SFSNPGATGN VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS
541 GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601 SF
//