LOCUS ABE41564.1 958 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 GGDEF domain protein.
ACCESSION CP000283-4324
PROTEIN_ID ABE41564.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_4347"
/transl_table=11
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001610"
/db_xref="InterPro:IPR001633"
/db_xref="InterPro:IPR011622"
/db_xref="InterPro:IPR011623"
BEGIN
1 MRLIRCLALL ALGLMLIAVA PQAHALDAVS VRSDAPAIDL TGVLEHQRSD TDRIQVSTAP
61 GNDGIVRRIE VRAREGGQHW VVFALANNTD DQLDRLIVVP HYRMVASGLF WPDLGLSRIA
121 TITPSTGDRP ERQDSTTADI FRVTLDPGSV ITFVAELRTD KLPQLYLWEP EAYKDKVNSF
181 TLYQGIVIGI SGLLALVLTI LFVVKGSIMF PAAAALAWAV LVYIGIDFGF WSKVFDMSAG
241 AERIWRASGE AILAATLLVF LFAYLNLSRW HVRYSHITLG WLAFLGSLVA LALFDPAVAS
301 GIARMSLVLI AFAGFTLIVY LSTHGFDRAV LLIPTWFLLV IWVIASGMTV AGSVTNDIVG
361 PALLGGLVLI VMLIGFTVMQ HAFAGSGATG GVVSDVERRA LALIGSGDLI WDWDVSADKV
421 FTSPETEALL GLKRGALEGS AATWLEVLHP LDQDRFRAAL DSVLDQRRGR LTQHFRLRTP
481 DGHFMWFALK ARPVVGADGE VTRVVGTLTD VTEAKNAEER MLHDAVHDNL TGLPNRKLFM
541 DRLGAVANFA KTMPNLRPTL MVIDLDRFKQ VNDSVGIAVG DSILLTLARR LTRILKPQDT
601 LARIAGDQFG LILLSEQDPA KITAFAETIR KTIKAPIAFN DREIFLTASI GLALSDPQTQ
661 LSDEIIKDAE LAMYHSKRIG GDRIDVYKPA MRARKSDRLT LESELRRAIE RQEITILYQP
721 IVRLEDRSVA GFEALARWDH PKLGRMAPGE FISIAEEIGL IVELGMFVMD QTAKQLAIWQ
781 RAMRSREPIF ASVNISSRQL LRHDLIHDVR TVLSRSSIAR GTLKLELTES LVMENPEHAA
841 QMLTRIRELG TGLSLDDFGT GHSSLAYLQR FPFDTIKIDQ SFVRTTSRGT RPVILKSIIA
901 LAHDLGMDVV AEGAETDSDA VELYQLGCEY AQGFAFGEPM DADAAMRLLT EERLEAAS
//