LOCUS ABE41522.1 638 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 1-Deoxy-D-xylulose-5-
phosphate synthase protein.
ACCESSION CP000283-4282
PROTEIN_ID ABE41522.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_4305"
/EC_number="2.2.1.7"
/transl_table=11
/db_xref="InterPro:IPR005474"
/db_xref="InterPro:IPR005475"
/db_xref="InterPro:IPR005476"
/db_xref="InterPro:IPR005477"
BEGIN
1 MSKTPLLDTI RTPEDLRKLR VDQVQQVADE LRQETIDAVS VTGGHFGAGL GVVELTTAIH
61 YVFDTPRDRL IWDVGHQAYP HKILTGRRDR IRTLRTAGGL SGFTKRTESD YDPFGAAHSS
121 TSISAGLGMA VARDLAGGNN NVIAVIGDGS ISAGMAYEAM NNAGAMNSRL IVILNDNNMS
181 IAPPVGAMSA YLSRLYSGKT YRSLREAGKQ IGKHLPKLIA DRAARAEEYS RGFMMGGGTL
241 FEELGFYYVG PIDGHNLDHL LPILQNVRDA ETGPFLIHVV TQKGKGYAPA EAASDKYHAV
301 VKFDIATGTQ AKAKSNAPSY QNVFGQSLVK EAAKDDKIVG ITAAMPSGTG IDIFEKAFPA
361 RTFDVGIAEQ HAVTFAAGLA TEGYKPFCAI YSTFLQRAYD QVVHDVALQS LPVRFAIDRA
421 GLVGADGATH AGSFDNAYLG CLPNMVIMAA SDEAELVHMV ATQVAINDRP SALRYPRGEG
481 RGVEMPDVGV PLEIGKGRVI RQGNKVALLS FGTRLAECEK AAEELAALGL STTVADARFM
541 KPLDVDLVLK LANEHEILIT IEEGSIGGFG THVMQTLAEH GKLDGEVKMR AMVLPDVFLD
601 HDTPTAMYAN AGLDAKAIVK KVFEALGKEH KAETVKLA
//