LOCUS ABE40961.1 732 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 phytochrome protein.
ACCESSION CP000283-3721
PROTEIN_ID ABE40961.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_3740"
/transl_table=11
/db_xref="InterPro:IPR001294"
/db_xref="InterPro:IPR003018"
BEGIN
1 MTAETPSSPA FGTADLSNCE QEQIHLAGSI QPHGALLVIS EPDHRVIQAS ANAAEFLNLE
61 CLLGLPLAEL DGDLLMRILP HLDPPSEGTP IAVRCRIGNP GADFDGLIHR PAEGGLIVEL
121 ERAGPAIDLA QMVGPALEKI RTANSIRALC EVTAQLFQDR TGYDRVMVYR FDEEGHGEVF
181 CERHVPGLES YFGNRYPSSD IPQMARRLYE RIRVRVLVDV NYQPVPLQPR LSPFTGQDLD
241 MSSCFLRSMS PIHLQYLKNM GVRATLVVSL VVGGKLWGLI ACHHYQPRFI HFELRAVCEL
301 LAEAIATRIT ALESFAQSQS ELFVQRLEQR MIEAISREGD WRAAIFDAAQ SILQPTGAAG
361 CALIYEGQVT TSGEVPATQD IREIAAWLGR QPNASVISTS SFTLDAPEFA SLISVASGVA
421 GAPVSNQPGE FLIWFRPERV RTVTWGGDPK KPFVIGNTPA DLSPRRSFAK WNQVVEGTSD
481 PWTPADLAAV RTIGQSVADI VLQFRAVRTL IAQERLDQFS RQVLTSDHPV VIADIEGKIL
541 LVNEAFTALL PKECTPIRRL DDLASAFLEP YDFMRSVGEL INHQRGWRGE LLLRGPGNAV
601 RPMMVRADPV MPARDRALGF VLIFTDNADR RAADAARGRF QEGVIKSTRV SSLRLDSKSD
661 LVHQNLLSAL VENAQLAALE ITYGVETGRI ADMLEGVRNS TLRTAEVLEH LMLHASRTAV
721 DDSTSRTQKT RK
//