LOCUS ABE40920.1 540 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 thiamine pyrophosphate
enzyme-like TPP-binding protein.
ACCESSION CP000283-3680
PROTEIN_ID ABE40920.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_3699"
/transl_table=11
/db_xref="InterPro:IPR011766"
/db_xref="InterPro:IPR012000"
/db_xref="InterPro:IPR012001"
BEGIN
1 MPAKNKAAPR AVSVKEATLD LLRALGIDKV FGNPGSTELP FLSDWPGDID YVLALQEASA
61 VAMADGYAQA TRNAGFVNLH SAAGVGNALG NIYTAFKNQT PLVITAGQQA RSLLPLQPFL
121 GAERASEFPR PYVKYSVEPA RAEDVPAAIA RAYAVAMQPP CGPTFVSVPI DDWARPASPV
181 VPRMVTRERG PERAAMQALA EALASAKKPA LVVGPSVDRA AAVDLMVKVA ERTNAPVWVS
241 PFSARCSFPE RHRLFAGFLH ASPGQLSEAL SRHDVVVVIG APVFTFHVEG HASIFDGAAT
301 LFQITEDADA ASVTPFGASI VATMKPALDL LLELLPETNR AAPPARTLPP APRAADPMPA
361 EVVLHELATT MPADAMLVEE APSHRLAMQK YLPMPGQDSF ATMASGGLGW SLPAAVGFAL
421 ALRKRRTICL IGDGSAMYSI QALWTAARRK LPLTVVVLNN GGYGAMRSFS QVMQVRDVPG
481 LALPGIDFVQ LAQSMGCDAE RVSRCDDLAP ALARALSYDG VFVVEAMLDR SVPLLYAKNG
//