LOCUS ABE40713.1 930 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 ATP dependent DNA ligase protein.
ACCESSION CP000283-3473
PROTEIN_ID ABE40713.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_3490"
/transl_table=11
/db_xref="InterPro:IPR012309"
/db_xref="InterPro:IPR012310"
BEGIN
1 MVAGKTLTLY RNKRDFEQTA EPRGDGKVAP SKRRRFVIQK HDATRLHYDL RLEYNGVFKS
61 WAVTRGPSLD PHDKRLAVEV EDHPLDYGDF EGTIPKGQYG GGTVQLWDRG YWECDDPERG
121 FKKGDLKFSL DGEKLQGSWV LVRMRHDRNG GKRTNWLLIK HRDDDAREGK ANDILDQDRS
181 VASGRAMTEI AQGKGRAPKP FMTGKAARVK ADAVWNSKEG LAADERAANG AGGAVASKPA
241 PPNKAKATTA KSKTAKSKTA KVAKPKPGRK AAAKRAAMPD FVPPQLCTSV ERPPGGDGWG
301 HEIKFDGYRM QLRVDAGEAT LKTRKGLDWT ARFQAIADQA AGLPDALIDT EIVALDQHGH
361 PDFAALQAAL SDGDTDNLIC FAFDLLHADG EDLRALPLSD RKRRLQELLT AARGRRKQGL
421 IRYVEHFDTG GDAILQSACK LSLEGIVSKK LDAPYRSGRS DNWTKAKCRA GHEVVIGGWK
481 TNAGKFRSLL VGVHHDDHLA YVGIVGTGFG QDVVKRLLPE LKAHAAKDNP FAGENAPRKT
541 ADVHWLAPEL VAEIEFAGFT GAGMVRQAAF KGLRADKPAG EVEAEEPAKV DIAGPKPGRR
601 AKPSSNAKSA KPKTATPNAG RSKTRATHAS RAEVMGVVIS KPDKELWPAS RIGDAVNKRD
661 LAHYYEAVGD WMIPHLEGRP CSIVRAPDGI GGEHFFQRHA MPGMSNLIAL AKVAGDRKPY
721 VQIDRVEGLI AAAQIGGLEL HPWNCAPGRY EVPGRLVFDL DPAPEVGFDA VIVAAREMKD
781 RLEAIGLPSF CKTTGGKGLH VVTPLVPSDD IDWKQAKIFA QTVCAGMADD SPDRYLLNMS
841 KQQRKGKIFL DYLRNDRMST AVAVLSPRAR EGATVSMPLT WTQVKAGLDP KRYTVETVPA
901 LLAKTKAWAD YDKAAAPLKA AIKKLAFSRA
//