LOCUS       ABE40420.1              1400 aa    PRT              BCT 28-JAN-2014
DEFINITION  Rhodopseudomonas palustris BisB5 DNA-directed RNA polymerase,
            subunit beta-prime protein.
ACCESSION   CP000283-3180
PROTEIN_ID  ABE40420.1
SOURCE      Rhodopseudomonas palustris BisB5
  ORGANISM  Rhodopseudomonas palustris BisB5
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Nitrobacteraceae; Rhodopseudomonas.
REFERENCE   1  (bases 1 to 4892717)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
            Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
            Oda,Y., Harwood,C.S. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of Rhodopseudomonas palustris BisB5
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4892717)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
            Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
            Oda,Y., Harwood,C.S. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4000372
            Source DNA and bacteria available from Caroline S. Harwood
            (csh5@u.washington.edu)
            Contacts: Caroline S. Harwood (csh5@u.washington.edu)
                      Paul Richardson (microbes@cuba.jgi-psf.org)
            Quality assurance done by JGI-Stanford
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LLNL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES             Qualifiers
     source          /organism="Rhodopseudomonas palustris BisB5"
                     /mol_type="genomic DNA"
                     /strain="BisB5"
                     /db_xref="taxon:316057"
     protein         /locus_tag="RPD_3194"
                     /EC_number="2.7.7.6"
                     /EC_number="3.5.1.16"
                     /transl_table=11
                     /db_xref="InterPro:IPR000722"
                     /db_xref="InterPro:IPR006592"
                     /db_xref="InterPro:IPR007066"
                     /db_xref="InterPro:IPR007080"
                     /db_xref="InterPro:IPR007081"
                     /db_xref="InterPro:IPR007083"
                     /db_xref="InterPro:IPR012754"
BEGIN
        1 MNQEIMNLFN PTTPAQVFDQ IRISIASPEK ILSWSYGEIK KPETINYRTF KPERDGLFCA
       61 RIFGPIKDYE CLCGKYKRMK YKGIICEKCS VEVTLSRVRR ERMGHIELAA PVAHIWFLKS
      121 LPSRIGQLLD MTLKDLERIL YFEYYVVLEP GLTDLKERQL LSEEEYLRAQ DQYGQDSFTA
      181 MIGAEAIREL LKGLELEKID AQLRVEMAET DSDIKHKKLA KRLKIVEAFR YSGNKPEWMI
      241 LTVVPVIPPD LRPLVPLDGG RFATSDLNDL YRRVINRNNR LKRLMELRAP DIIIRNEKRM
      301 LQEAVDALFD NGRRGRVITG ANKRPLKSLA DMLKGKQGRF RQNLLGKRVD YSGRSVIVVG
      361 PELKLHQCGL PKKMALELFK PFIYSRLDAK GLSTTVKQAK KLVEKERPEV WDILDEVIRE
      421 HPVLLNRAPT LHRLGIQAFE PVLIEGKAIQ LHPLVCAAFN ADFDGDQMAV HVPLSLEAQL
      481 EARVLMMSTN NILHPANGQP IIVPSQDIVL GLYYLSILRE GLPGEGKVFG DLAELEHALH
      541 AKVIHLHTKI KYRWDSLDDE GKPYKRLIET TAGRILLGQV LPKSVKLPYE TINKLMTKRE
      601 ISSVIDQVYR HCGQKETVIF CDRIMALGFF NAFKAGISFG KDDMVVPASK WKIVDTTRTL
      661 AKDFEQQYND GLITHGEKYN KVVDAWSKAT EEIAKEMMKE ISAVRKNASG AESQVNSIYM
      721 MAHSGARGSP AQMRQLAGMR GLMAKPSGEI IETPIISNFK EGLSVLEYFN STHGARKGLA
      781 DTALKTANSG YLTRRLVDVA QDCIITQDDC GTSLGIKMRA IIDAGTVVAS LGSRILGRTA
      841 GEDVRDPQTN EVIVKKGELM EERDIEAIHQ AGVQEVKIRS ALTCELVNGI CGKCYGRDLA
      901 RGTPVNHGEA VGVIAAQSIG EPGTQLTMRT FHIGGAAQIN EQSVIESNFE GKVVIKNKAI
      961 ARNGENHNVA MVRNMVVAIV DPDGTERATH RIQYGARMHV DEGDTIKRGH RIAEWDPYSR
     1021 PVLTEVEGTI DFEDLIEDQS ISETLDESTG IAKRIVIDWR STRGGADLRP AIVIKGKDGK
     1081 VLKLARGGDA RYMLSVDAIL SVDVGAKVKP GDILARISTE SAKTRDITGG LPRVAELFEA
     1141 RKPKDAAIIA EIAGTIRFGR DYKNKRRISI EPMDKEEEAR EYLIPKGKHI HLQDGDIVEK
     1201 GDFIVEGNPA PHDILAIKGI EELAAYLVNE IQEVYRLQGV LINDKHIEVI VRQMLQKVEI
     1261 TDQGETDMIS GEQIDKIEFD QLNVKARDEG KKIATGTPVL LGITKASLQT RSFFSAASFQ
     1321 ETTRVLTEAA VNGKVDPLEG LKENVIVGRL IPAGTGASMA KIREVAMKRD RMILDEREKQ
     1381 ATIVPPAAPE AEPLALPPAE
//