LOCUS ABE39809.1 968 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 valyl-tRNA synthetase protein.
ACCESSION CP000283-2569
PROTEIN_ID ABE39809.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_2579"
/transl_table=11
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR002300"
/db_xref="InterPro:IPR002303"
/db_xref="InterPro:IPR013155"
BEGIN
1 MRAFAFGEAP FFDCMAMIEK TYQPAEIEGR IARAWEDADA FKAGRPDRRD AEPYSIVIPP
61 PNVTGSLHMG HALNNTLQDI LCRFERMRGR DVLWQPGTDH AGIATQMVVE RQLMERQEPG
121 RREMGRAKFL ERVWQWKAES GGVIVNQLKR LGASCDWSRE RFTMDEGLSR AVVKVFVELH
181 RQGLIYKDKR LVNWDPKLLT AISDLEVQQI EVKGNLWHLR YPIEGVSFDP ENPASYIVVA
241 TTRPETMLGD TAVAVNPDDE RYVDLVGKHV ILPLVGRRIP IVADEYSDPE KGSGAVKITP
301 AHDFNDFEVG KRHHLPQINV LDIEGKIAIA DNSAYLEGLP EGAREFAEEI DGTDRFAARK
361 LIVGRLDEFG FLEKIEPNVH MVPHGDRSGV VIEPYLTDQW YVDAKTMAQP AIAAVRSGAT
421 TFVPKNWEKT YYEWMDNIQP WCISRQLWWG HQIPAWYGPD GKVFVAETEE EAIGNALGYY
481 VEQEVITPAQ AHEMTQDASK RDGFITRDED VLDTWFSSAL WPFSTLGWPD ETSELERYYP
541 TNVLVTGFDI IFFWVARMMM MGLHFKNDVP FPTVYIHALV RDEKGAKMSK SKGNVIDPLH
601 LIDDYGADAL RFTLAAMAAQ GRDIKLASSR VEGYRNFATK LWNACRFAEM NACAAPIGFD
661 YTTAKETLNR WIAHETVRAV RDVTEAIESY RFNDAAGAAY RFVWNVYCDW YLELAKPVLM
721 GEDSTAKTET RAMVAWARDE ILKLLHPFMP FITEELWAVT GQRDGLLVLA PWSRKAELSV
781 EVFASPVLTD PMVPPVILPA RHDAEFSDPA AEAEIGWVVD LVTAIRSVRA EMNIVPSTLT
841 PLVLAGASAE TRARAERWSD VIKRLARVGE ISFTDAAPQG AVQLLVRGEV AALPLKGVID
901 LAAEQARLDK ELAKAEADIK RVDAKLSNEK FVANAPEEIV EEEKEKREAA VARKVKILEA
961 LLRLKNAT
//