LOCUS ABE39742.1 1019 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 Outer membrane autotransporter
barrel protein.
ACCESSION CP000283-2502
PROTEIN_ID ABE39742.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_2512"
/transl_table=11
/db_xref="InterPro:IPR001753"
/db_xref="InterPro:IPR001969"
/db_xref="InterPro:IPR005546"
/db_xref="InterPro:IPR006315"
BEGIN
1 MGISELRVIA LDADKVIHRT LRISGFAAAL LFSTALTAPA FAGGGASGHY AHWVARGGDD
61 QLTDPGSPGE DGSGCCGGGG GGAGTTGGQG GTSLYDAGGA GGSTPGADGA AGSMDFWGFG
121 SGGGGGAHGY VGATLPTSGV RGGAGGKGGL GDTSKINHDA TEAGGGGAGG YGAVVTGSGL
181 LGTLTTSVYG GSGGAGGDAL NDAAAGSGGS GGVGLRFTST ANKQLIIGNS VSGGNGGATG
241 ANGGVNGLRT AGLGGVGLEG ASMDVTMLAG GSIAGGMSGD SVTQANAINF TDGRNALRFT
301 GPTSQLSGNI NLGSNAALWL YGVPGLPGGT VIDNVITGGG TITKDGSGTI TFSAANTYSG
361 GTVINDGTLK LSGAGTLGNA TSTTTVHSGT LDLGATTQTQ SRVNLYSGML QNGNLNASVF
421 SNGGTIKDLG GTASLTTEDG TTTLQGINRY SGATVVNGGT LDVRGTITGT SSVGVYDGAT
481 LTGAGIIVAP SVTIYSGGTF KPGDGTAGSS TTVEGSLAFQ SGAFYSVTID PVTASFANVV
541 TGLNSPGMVT IDSGATVNAV FANGSYISKT YTILTTTDGR SGTFDPTVKT TNLPANFRTT
601 LGYDANNVYL NLALNYTPEP KPEPTNPTAP LFTPLNQNQR NVGNAVINAF NAGGAIPIAF
661 GALTPAGLSQ ASGETSVGSQ QTTFDAMNLF MGAMIDPFAA GRSDGVSPSA RVSSYAEEHS
721 PRNAYAMFTK AMPVKADPFA QRWNVWATGF GGSQTTDGNT ATGSNTSTSR IYGAAVGADY
781 RISPNTLAGF AMSGGGTTFS VANSGNGRSD LFQVGGFVRH TIGTSYLTAA LSYAWQDVTT
841 DRNVAGIDQL QARFNVNAFS GRFEGGTRYV TPWMEIGATP YAAVQATAFD LPGYREQVLS
901 GPGIFALNYD AKGITSTRSE LGVRTDKAYA LTDSILTLRG RFAWAHEFNP DRSVAATFQS
961 VPGASFVVNG ARQASDAALT TASAEVKWRS GFSLAAIFEG EFSDVTRSYA GKGVARYQW
//