LOCUS ABE39645.1 746 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 Lytic transglycosylase,
catalytic protein.
ACCESSION CP000283-2405
PROTEIN_ID ABE39645.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_2415"
/transl_table=11
/db_xref="InterPro:IPR000189"
/db_xref="InterPro:IPR008258"
BEGIN
1 MRDIRPINPV TAFASVLRAS TATLALSIGL SGFAIEAMAA PKNVPLPKPR PISRSIVPKT
61 TPAVTASIPK PSAQLATAAP TAPVIEPTRP HSAPAMVTRK QATRSAVATT TQTSQADAEA
121 LEGVIEQVRK RKAADAIQIA DTISDPLARK LAEWIILRGE NNGVSVERYR AFVRANPSWP
181 SQTFLRRRAE AALWDDNRDD SAVLAYFNSE TPLSAKGKLA LARATLARGD RRTAEQLVRD
241 AWRSDTMSAA TETTAIEMFG ALIAPGDHKA RMDAFLYGND NEPGLRAARR LGAAQLALAK
301 ARLAVDNKSA QGKSLLDDVP DELQSDPGYM FSKIQLLRRE EKIAEAGRLM LTVPRDPNRL
361 YNLDEWWIER RLLARKLIDI GDYRLAYLVA RNAATPTREV YKTEQEFTAG WIALRFLKDP
421 ATAAQHFARI GNDTTNPTAR ARGGYWQGRA AEAVGRTQDA RAAYSAAAAQ STSYYGQLAR
481 AKLGLPQLDL NGAPSSQGRG VERLEVVRAV QLLYAIGEGE VAIPIFADVG ENGDVDALLG
541 LSELAARNND ARAMLLVGKA ALNRGLPFDH YAYPIVGIPQ FKQIGPEVER SIVYAIARQE
601 SGFNPAVVSP AQAYGLMQVT PDAAKYVCRR HGCTYDVQRL KNDSVYNATL GAAELGGLIE
661 DYRGSYIMTF AGYNAGRGSV RKWVERYGDP RDPKVDAVDW VELIPFSETR NYVQRIIENL
721 QVYRARFGGG TRLQIDADLR RGAATE
//