LOCUS ABE39643.1 718 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 TonB-dependent receptor,
plug protein.
ACCESSION CP000283-2403
PROTEIN_ID ABE39643.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_2413"
/transl_table=11
/db_xref="InterPro:IPR000531"
/db_xref="InterPro:IPR012910"
BEGIN
1 MFGLGAMSAA AQAPTQQTQV QSLPEIAIDA PSRGTRSGVS HPSRRSASQQ ARPPASAPTA
61 AAASTSAGAA PTPMSAPQDQ AASARIISGA ELNAVPFSRV GEVLEAVPGL VVTQHSGEGK
121 ANQYFLRGFN LDHGTDLAIT VDGMPVNMPT HGHGHGYADI NFMIPELISA MTLRKGPYFA
181 DVGDFGSAGA VSIDYLRAMP KTLAGVTLGS FGYRRLLGAG STKAGEGTLL AAFEANSYNG
241 PWDVPDNIRK LNGVLRYSQG TPTDGFSLTG MAYANRWTST DQVAQRALDQ GIIGRYGSLD
301 PTDGGIANRF SLSGRFARSS DIGQTDINAY VIRSSLQLYN NFTYFLDDPI KGDQFNQYDR
361 RTVVGLSGAQ RFDYRFAGLP VETRVGLQSR ADAISLGLTK TLQRDWLSTV RADDVQEQSL
421 GLWTDTTVRW TDWLRTSAGV REDFFNGRVS SDTPANSGSA SASMTSPKVG IVLGPWVSTE
481 FYGNAGTGLH SNDIRGATIT VDPTDKTTPL DRVPLLVRSK GAELGVRNRS ITGLTTALAV
541 FVLDFDSELL FVGDAGTTEP SRPSRRVGVE WTNQYRPLPW LGVDLDLAYT RARFTDVDPA
601 GNMIPGAPAW VASAGLTFGR ETGWFGALKG RYFGVRPLVE DGSERSLASL IFNARAGYRF
661 DNGLRLQLDA LNLFNAKTNQ IEYYYLSRLP GEPLGGVGDR HVHPAEPLAL RLTLAGAF
//