LOCUS ABE39339.1 519 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 Substrate-binding region
of ABC-type glycine betaine transport system protein.
ACCESSION CP000283-2099
PROTEIN_ID ABE39339.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_2104"
/transl_table=11
/db_xref="InterPro:IPR000515"
/db_xref="InterPro:IPR007210"
BEGIN
1 MSVFSDPRWT EALANLPDYL GSHVRVSVAA LGLGLAVSLP LAILARHRPV LRGALLGFAG
61 IVQTIPGLAL LALFYPLLLA LAALSASTLG VSFSAFGFLP AVLALALYSM LPVLRNTITG
121 LAGVDPALIE AAQGVGMTPR QTLTMVELPL ALPVIMAGIR TSAVWVIGTA TLSTPIGQTS
181 LGNYIFAGLQ TQNWVLVLFG CAAAAVLALA VDQLLALIET GLRLRSRLRV ALGGLGLAAL
241 VIATLAPSLA SSKSTYVVGA KTFTEQYVLA ALIAQQLDDR GLPATIRAGL GSSVIYDALK
301 SGDIDAYVDY SGTLWANQFH HPGIAARDQV LSDLKGDLGR DGVTLLGELG FANAYALVMP
361 RARAEALGVR SIADLAARAP QMTIAGDYEF FSRPEWAELR RTYGLSFKTE RQMQPDFMYA
421 AVASGEVDLI AGYTSDGLIA KYDLVVLDDP RQAIPPYDAV LLVSPKRAGD TKLRDALSPL
481 VGRIDIAAMR AANLRAASGG GTGTPDVVAR ALWDSVKPR
//