LOCUS ABE39252.1 1156 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 Outer membrane autotransporter
barrel protein.
ACCESSION CP000283-2012
PROTEIN_ID ABE39252.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_2017"
/transl_table=11
/db_xref="InterPro:IPR000209"
/db_xref="InterPro:IPR005546"
/db_xref="InterPro:IPR006315"
BEGIN
1 MGAGRHFRNL STLFLCTTFL VSAPVSAALY AAETGAKHKP IAKSSLPSDL KSSLAEAVRL
61 GERELIAQAY DSTYRNPGLR NAVVHYASEL SPAALRDVTT AADLGVLTSG QRMTLAPNAA
121 QVLSTRTATA SGLGATSYQN VAAAVNNSPN LPNPMPSLQA QTWNLDLIGA TAAYDRGFTG
181 AGVKVTVADT GFDVANAGLV NRLVTSVGRN YVVKDGTTYD PNELTPLTGT DMHGSHVAGI
241 VAGEKFDNVG AHGVAYDARV IPLRILTAAG YSVAGDGDSS ASALNYFAGL TGTMVYNASY
301 GPNFNDFTNL TRWTVGNIAD EGNAALNALR AGKLVVAANG NDRGSNPIAA RNPSGLALLP
361 FLNPAHAGLG VYDDQGQQLD GTVLQRQNGQ IIAVMSVGIT KAAAWYSNLC GVAASWCVAA
421 PGGDDRTGAE VYSTVPQNTY AFESGTSMAA PTVSGAIAVL IQANPSYNAR DLANLLFSTT
481 EDLGAAGVDA VFGYGLIRLD RATDGPTSLA ANSTVDVAAG QTSYWSRLLT TQGDFSKAGD
541 GILTISGRTT AGGNVFAQLG TLAVDGTLTM AAGNRLTVAQ PATLAGFGAV VGDTSIAGTL
601 SPGKMANVGD LVANDVVPAG TVLNGNSVGT LTFNGNVTLT STANTMIDID GSLLVPGGPG
661 TYDKIYVTGA GNVFYAAGTL TPVLRGSVGT VSNYTPAIGA EFAFVQAQNG ASTAGTFSSL
721 VQPTSGLPAN GRFDLIYQPT SITLVVTPAS FSAVATADQL GPNQRSVARI LDNERAASGV
781 MPSASEKALY DALYKLNTEA ELDKALTQLA GPGQPAISSA PLHAFAGFLG AIGDRQDMMA
841 LGGEQGQNGT AQSFALNYAG RTMMSAETNS AINAFASINP AERVRDGWAT WGQGFGRTSR
901 VGDAGDLAGS KTVSAGFTLG ADRWFSNNLV AGGAFGYART TATSTDISGN SDTYAGAAYA
961 SWMPGAAVFD WRIAAGPSQM STSRQILLAT NGLQGNSNGV GVGTALEAGY RVALAPDVTL
1021 KPFAGLSWQG FRRDGYSESQ QPIGLVYAAQ TSEKLTTTAG AALSARLRTA DGATLMPELK
1081 VGWGYDLRDT TLISQAALLD EGFVVSAAQP GRNAALVGAK ISGWRAETFR MFAAYNGEYR
1141 SNAISHQLSA GARFNW
//