LOCUS ABE39228.1 1283 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 gene transfer agent (
GTA) orfg15 protein.
ACCESSION CP000283-1988
PROTEIN_ID ABE39228.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_1993"
/transl_table=11
BEGIN
1 MVALVLSIAG GAVGALFGPV GAIAGRIAGA LAGSMLDHAL LGGGDRNVEG PRLADLDIMA
61 STEGAPIPRV YGRARLAGQV IWATQLEEVI SNEQSSSGGK GFGGPTTTTT TYAYFANFAV
121 GLCEGPIGRV ARIWADGKPL DLSGLNVRVH RGSEDQSPDD LIVAKQGAGD APAYRGLAYV
181 VFERLPLAAY GNRIPQLSFE IVRPIGGLEA MVRAVTLIPS TTEFGYEPST RVQISGKGSA
241 TPENRHVAHA ASDVVDSLDE LQGVCPRLER VAVVVAWFGS DLRAGQCSVR PGVESRDKWV
301 DRAIWSVAGA SRGDAWLVSQ VDGRPAFGGT PSDDSVVHLI GELKARGLKV TFYPFVMMDV
361 PAGNGLPNPW TGAAPQPPYP WRGRISCDPA PGQAGSPQGT AAAAAQVESF FAGGTWNYRR
421 MILHYAQLCA AAGGVDAFLI GSELRALTRV RSGPGVYPAV QHLVALASDV KAIVGGGTLV
481 TYGADWTEYG ADVVTADASE VRFPLDPLWA SPAIDAIGID YYAPLADWRD DAGHLDATAA
541 ASNYDRAYLD RNVFGGEAFD WYYPDDAARA AQSRAPITDG LGKPWTFRVK DIRNFWSQPH
601 YERVGGAELT SPTAWAPMSK PVWLTEVGCP AVDKGANQPS VFPDPKSSEN FAPYFSSGDR
661 DDLIQRRYLE TIIAAFDPVF GASEARNPVS PVYGGRMVDP SAIHLWTWDA RPYPVFPAAQ
721 EVWSDAPNWQ TGHWLTGRLG GAPLDALVAR LLADSGVGGV DSSALQECCD GYVVDRPMTP
781 RAMIEPLAMA YAFDATAADG TLRFVQRGGA PVVELTEDDL VLPDRAALSR LTRAQETELP
841 REVAFGFSDA IADYRRSAAS SRRLVGGAAR IVHADLAVVT NDAAAARRAE IFLQDLWAGR
901 ETASFALGLS HLSLAPGDVV ALTLNGRRRL FEIGELVDTM SRAVKARSID PEVFALPQRA
961 PRLGAPQIPA ALGPAHVVAL DLPVIDAAAP EVLTRLAVFA NPWPGAELIY ASADGASYQP
1021 LASATARAIL GETLDPLPRG PLGLWDRRNR VRVRIYGGAL SSLSDASVLN GGNAAAVQNP
1081 DGEWEILQFA NAELVDGNTY ALSRLLRGQA GSEQAMRDSL PAAAPFVLLD SHLVQLARGV
1141 DALGRPLQLR VVAAGRSHDD PSATALAVTP GPTALRPFAP VHLKAVRTTA GVALSWIRRT
1201 RIGGDGWSGE APLGEESEAY ALDIRAPSGA VVRSITTAAP QALYTTADEI ADFGAPQTAL
1261 RIRVAQLSAT VGPGFAADAT LAL
//