LOCUS ABE39138.1 1110 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 DNA polymerase III, alpha
subunit protein.
ACCESSION CP000283-1898
PROTEIN_ID ABE39138.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_1903"
/EC_number="2.7.7.7"
/transl_table=11
/db_xref="InterPro:IPR003141"
/db_xref="InterPro:IPR004013"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004805"
/db_xref="InterPro:IPR011708"
BEGIN
1 MKVPAYAEIG VTTNFSFLEG GSHPQDYVHE ASRLGLEAIG IADRNTLAGV VRAYSELGNE
61 DLIHKPRLLI GARLVFADGT PDVLAYPVDR AAYGRLCRLL SVGKLRGAKG ECHLAVADLE
121 AFSQGLSLVL MPPYRFQASA IAAALQRLTA LESGGVWLGL TPYYRGDDKR RLARLKRVAW
181 AARVPGIATN DVLYHHPERR ALQDVLSCVR EKTTIDKIGR RLEANAERHL KPAAEMARLF
241 RADPDAIAET LRFAAGISFT LDELKYHYPD EPVPPGKTAQ QHLEDLTWEG VAEYFPAGIS
301 DKLHATIDKE LGIIAHRGYA QYFLTVHDIV RYARSQDILC QGRGSAANSA VCYVLGITCV
361 DPTEIDLLFE RFVSEERDEP PDIDVDFEHS RREEVMQYIY RRYGRHRAAI VATVIHYRPR
421 SAIRDVGKAL GLSEDVTAAL ADTVWGSWGK GLNEMQVKQA GLDPHNPLIG RAVELATELI
481 GFPRHLSQHV GGYVLTQDRL DSYVPIGNAA MEGRTFIEWD KDDIDAIKMM KVDVLALGML
541 TCIRKGFDLI AQHKGVRYAL SDIKSEDDNA VYQMLQRGES IGVFQVESRA QMNMLPRLKP
601 KCFYDLVIEV AIVRPGPIQG DMVHPYLRRR NKQEPVVYPA PAGHAGDANE LEVILGKTLG
661 VPLFQEQAMR IAIEAAHFTP DEANQLRRAM ATFRNVGTIG KFESKMVGNL VARGYDPVFA
721 KNCFEQIKGF GSYGFPESHA ASFAKLVYVS AWMKCEHPDA FCCALLNSQP MGFYAPAQIV
781 GDARANEVEV RPVDVSFSDG QCTLEERCGK HHAVRLGFRQ IDGFVWADPD EERVRREAGL
841 LPSEDWAARI VAARARGPFN SLERFARLTA LPKRALILLA DADAFRSLGL DRRAALWAVR
901 RLPDDVPLPL FEAASASEQL DENAAPLPQM PTAEHVVADY QTVRLSLKGH PMEFLRPLFA
961 AERVVTCRSI SESRVSGQRM RCAGVVLVRQ RPGSAKGVVF ITLEDETGIA NLVVWPAVME
1021 TFRKEVMGAR LLWVEGRIQA SPEGVVHLVA ERLSDRSFEM TRLSDNLAAP RLGELHEPLN
1081 DDRREHPDNP AQRIRHPRDV RILPPSRDFH
//