LOCUS ABE38818.1 814 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 L-carnitine dehydratase/
bile acid-inducible protein F protein.
ACCESSION CP000283-1578
PROTEIN_ID ABE38818.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_1581"
/transl_table=11
/db_xref="InterPro:IPR003673"
BEGIN
1 MRALPLSELR VVEIGSGDAL AYCGKLFADF GAEVIKVEPP GGDPDRQIAP LVDAGGRSES
61 ATFAWLNTNK YSIIGDLDRP DDTARIERLL ADSDLLLDAR HPAAIEASPL SHRRLREVQP
121 GLAITSLSWF GEHGPYRDYL ATDSVCRSLA GLVKLVGPAE GPPVLPRDGQ IAVIAGLTAF
181 IPTLAGLYAR ADQGARRFAV NAFEAMLQIT EFDIALALEA GSTRPRIGLN RFGRGFPVGN
241 YATKDGWLGV TVVTPAQWLG FCAMIGLPEL GPDPRYSATA DRFIHADELN SIIRPVLMHK
301 TALEWFERGI ELRLPLALIP DMAQLLAQPV MRERGAFAKV EIGASSFDAP VLPQRLTKSP
361 GKPNGRAPRA GEHNDAELSP RRRTAERAVR PNEALPLSGI RIVDLTMGWA GPSAVRQLGD
421 LGADIIKVES CQYPDWFRGT DPRGPYHPER TYEKTYWFQT MNRNKRGITL DLTTDDGRAV
481 LKQLLAGADA VIDNYAADVL PRLGLDVAAM QAINPRLVVV TMPAFGITGR WSAARAYGST
541 LEQASGLPSV TGRDGDPPTM LHAALGDPVG GLNAAAALML GLMHQKRTGD GQHIDLSQVE
601 CMLPMLASSI IEQSATGHTS PRIGNRHPRF VPSGCFPCAG DDQWVTLAVQ TDAQWKALCR
661 VMHRPDFAAD PSLATADGRR ADEDRIEIAV RHWTSSVRPE LAMVTLQEAG IAAGVARLPI
721 DLVGDPHLLK TGHWQPVVRR FMGAHLLPSV SYREDFADLP YPIERLAPTL GQHNDEVLRE
781 LGLSDAEIEG LHDRGVIGNV ATTKKSGGVR LAAE
//