LOCUS ABE38299.1 582 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 transcriptional regulator,
NifA, Fis family protein.
ACCESSION CP000283-1059
PROTEIN_ID ABE38299.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_1061"
/transl_table=11
/db_xref="InterPro:IPR002078"
/db_xref="InterPro:IPR002197"
/db_xref="InterPro:IPR003018"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR010113"
/db_xref="InterPro:IPR011704"
BEGIN
1 MAQREVRLVE SEQSRQPMNQ NPIPLSEIAL TGIFEISKIL TAPARLEVTL ANVVNLLQSF
61 LQMRNGVVSL LADDSVPDIT VGGGWNEGSD NRYRARLPQK AIDQIVATSV PLVADNVSTH
121 PMFSAADALA LGATDETRVS FIGVPIRIDS RVVGTLTIDR VRDGQSNFRM DADVRFLTMV
181 ANLIGQTVKL HRVVARDRER LMAESHRLQK ELSELKPQRE RKRVRVDGIV GESPAIRTLL
241 AKVSIIAKSQ SPVLLRGESG TGKELIAKAI HELSARSNGP FIKINCAALP ESVLESELFG
301 HEKGAFTGAI ASRKGRFELA DKGTLFLDEI GEISPAFQAK LLRVLQEQEF ERVGGNQTIK
361 VNVRIVAATN RNLEEAVARK EFRADLYYRI NVVPMILPPL RDRPSDIPLL ATEFLKNFNK
421 ENDRELAFEP HALELLKACS FPGNVRELEN CVRRTATLAA GPAIHDSDFA CHQDECLSAI
481 LWKGHAEPPP ERPRPQIPLQ VLPRKVPVEV VTPREAFTAP TEPDQTAVRA ASNDAAMPER
541 ERLINAMERS GWVQAKAARL LGLTPRQIGY ALKKHDIELK HF
//