LOCUS ABE37861.1 948 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 formate dehydrogenase,
alpha subunit protein.
ACCESSION CP000283-621
PROTEIN_ID ABE37861.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_0623"
/transl_table=11
/db_xref="InterPro:IPR000887"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR006478"
/db_xref="InterPro:IPR006655"
/db_xref="InterPro:IPR006656"
/db_xref="InterPro:IPR006657"
/db_xref="InterPro:IPR006963"
BEGIN
1 MALVHEIDFG TPRSPSETMV TLTIDGRSVS VPEGTSIMRA AMEIGTAIPK LCATDMVDAF
61 GSCRLCLVEI DGRSGTPASC TTPVADGLVV KTQTERLKQI RKGVMELYIS DHPLDCLTCS
121 ANGDCELQDM AGAVGLRDVR YGYSGNKHPN PGLDESNPYF TYDASKCIVC SRCVRACEEV
181 QGTFALTIAG RGFGSVVSPG MQESFLGSEC VSCGACVQAC PTATLNEKSV IEIGTPERSV
241 VTTCAYCGVG CTFKAEMRGE EVVRMVPYKD GKANRGHSCV KGRFAWGYTN HKERILKPMI
301 RARITDPWRE VSWDEAFSHA ASELKRIQAK YGRDSIGGIT SSRCTNEETF LVQKLIRAGF
361 GNNNVDTCAR VCHSPTGYGL STAFGTSAGT QDFDSVEHTD VVMIIGANPT DGHPVFASRL
421 KKRLRAGAKL IVVDPRRIDL VRSAHVEAAQ HLPLKPGTNV AVLTALAHVI VTEGLANEAF
481 VRERCDWSEY EHWASFVAQP NNSPEATAAM TGVDPQALRE AARLYATGGN GAIYYGLGVT
541 EHSQGSTTVM AIANLAMVTG NLGRQGVGVN PLRGQNNVQG ACDMGSFPHE LPGYRHISTD
601 AVRDSFEALW GVTLNSEPGL RIPNMLDAAV DGSFKALYVQ GEDILQSDPN TKHVAAGLEA
661 MECVIVHDLF LNETANYAHI FLPGSTFLEK NGTFTNAERR IQRVRKVMTP KNGLEDWEVT
721 LRLAEAMGFK MSYDHPSQIM DEIATLTPTF TGVSYARLDE LGSIQWPCNA NAPEGTPVMH
781 IDHFVRGKGK FVITEYVATD ERTGPRFPLL LTTGRILSQY NVGAQTRRTA NTVWHDEDRL
841 EIHPHDAEQR GVRDGDWVRL ASRAGETTLR ALITDRVAPG VVYTTFHHPD TQANVVTTEY
901 SDWATNCPEY KVTAVQVSPS NGPSEWQRAY EEQATAARRI ASAAEAAE
//