LOCUS ABE37306.1 743 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 diguanylate cyclase/phosphodiestera
se with GAF sensor protein.
ACCESSION CP000283-66
PROTEIN_ID ABE37306.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_0066"
/transl_table=11
/db_xref="InterPro:IPR000160"
/db_xref="InterPro:IPR001633"
/db_xref="InterPro:IPR003018"
BEGIN
1 MISAPLPDNE QARLAALRRY DILDTPPEDC FDIFPRLVVR AIGVPSAVIS FVDRERQWFK
61 ARINVGDQQT PRDIAFCAHA ILLERPLVVA DATIDPRFHD NPLVTAPGGM RFYAGAPIRT
121 ADGFPIGVLC AIDKVPRLLG KAQLETLREL ASLVADQLEL RLANRRLARE LAERERTENH
181 LLSMSRTLEL SNLRLDAALN NFLHGLCMFD GDRKVVVSNA RFSEIYSLEP DEIECGVPLS
241 AIQSVCRERG TFVETWSERR LGRSSHEISE VSSLLDGRAI LVRCQPVAGG GWMTVHEDIT
301 ERYRSEQQIA HMARHDLLTG LLNRGAFHER MDEACARLRR WGETFSVIML DLDRFKLVND
361 SLGHPAGDAL LRAVVSRLKA CIRETDVLAR LGGDEFAVLQ TRTKDSYEEA VAFADRIVNC
421 LIDPIEIEGH QLVISTSAGI ALAPQHGTDS DELIKNADLA LYQAKAAGRN GYVTFETAMK
481 DRANARQQLE GELRQAILHR EFDLYYQPQV DARSGRVIGA EALLRWRHPR RGFVPPSEFI
541 PIAEETGLIE KLGEWVLTEA TTEAIRWPAP IKLAINLSPI QLTRGKLVDT VTQALRFSGL
601 PPGRLEVEIT ETVFLEDEVN NLAVIRQLRA LGVSVALDDF GTGYSSLSYL TRFPFDQIKI
661 DKFFSMNLID RRDCAAIVSS VITLARGLGI STVAEGVETV RQFELLREAG VDYFQGYLFG
721 HPVPASALDF GTAQAVARIT EVA
//