LOCUS       WQZ30551.1               941 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori excinuclease ABC subunit UvrA protein.
ACCESSION   CP079244-672
PROTEIN_ID  WQZ30551.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /gene="uvrA"
                     /locus_tag="E5P95_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001163943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MQHKTIMDKI IIQGARENNL KNIFLEIPKN QFVVFTGLSG SGKSTLAFDT LYAEGQRRYL
       61 ESLSSYARQF LDKVGKPNVD KIEGLTPAIA IDQKTTSKNP RSTVGTITEI YDYLRLLFAR
      121 IGEQFCPTCL EPISSMSASD IISQICHLEE NSKIIILAPI IKDKKGSFND KLESLRLKGY
      181 VRAFVDGVMV RLDEEIHLHK TKKHTIEAVV DRVVINSENS SRIASAIEKA LKESYGELEV
      241 EILQDNMPSI RKHYSEHKAC FKCKMSFEEL EPLSFSFNSP KGACESCLGL GTKFSLDISK
      301 ILDPNTPLNQ GAIKVIFGYN RSYYAQMFEG FCEYNGIDTA LCFNELNKEQ QDALLYGNGT
      361 EISFHFKNSP LKRPWKGIIQ IAYDMFKEQK DLSDYMSEKT CSSCEGHRLK ASSLSVQVAG
      421 LKMADFLTKP IEEVYHFFND PTHFSYLNEQ EKKIAEPILK EILERVFFLY DVGLGYLTLG
      481 RDARTISGGE SQRIRIASQI GSGLTGVLYV LDEPSIGLHE KDTLKLINTL RNLQKKGNTL
      541 IVVEHDKETI KHADFVVDIG PRAGRHGGEV VFSGSVKELL QNNHSTALYL NGTKKIERPK
      601 FEPPKEKHFL EIKNVNINNI KNLSVQIPLK QLVCITGVSG SGKSSLILQT LLPTAQTLLN
      661 HAKKIQSLNG VEIVGLEHLD KVIYLDQAPI GKTPRSNPAT YTGVMDEIRI LFAEQKEAKI
      721 LGYSASRFSF NVKGGRCEKC QGDGDIKIEM HFLPDVLVQC DSCKGAKYNP QTLEIKVKGK
      781 SIADVLNMSV EEAYEFFAKF PKIAVKLKTL IDVGLGYITL GQNATTLSGG EAQRIKLAKE
      841 LSKKDTGKTL YILDEPTTGL HFEDVNHLLQ VLHSLVALGN SMIVIEHNLD IIKNADYIID
      901 MGPDGGDKGG KIIASGTPLE VAKNCEKTQS YTGKFLALEL K
//