LOCUS       WQZ30338.1              1043 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori type I restriction endonuclease subunit
            R protein.
ACCESSION   CP079244-440
PROTEIN_ID  WQZ30338.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001919310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MPHNEITRVQ VPALMHLAKL GYDFIPTNSK PNLDTATNIL TDSFTQAFER LNPTKNAKDS
       61 LTEMKKRLNY NDLGKSFYEY LLKSEHQIID FDNPNNNLYE MMAELPYKSF RPDATLFING
      121 LPLVNIEVKQ PLAGQGIKEE RDRHIKRYKN PENKVFYNLA QIWLFSDNLP YDENNPNQGA
      181 FYSASYSPIF QRFVEANKLD ITPPPPRKND QNHQNHQNYK SLEEIQKSVL NEFNLKETDC
      241 PKSPKDTPTN ALLTSFCSPK RLCFILKYGI SFLKEKSEFK KHIWRYAQMF ASLNVLKELQ
      301 KHYETNPKDP LKGIIWHTQG SGKTALTYHL TKLIKDFFSP LGKKTKFYFI VDRLDLLEQA
      361 KNEFLKRGLQ AHEAENKEDL SQKLKSSSVF ENPQGNDEII VVNIQKFKAP NEYPSDSAPK
      421 EIISKTDLQE SIQNSHDLQR VFIIDEAHRS YDPKGCFYAN LIECDKTAIK IALTGTPLLE
      481 DNAQDKATKK TFGNYLHTYS YTESIKDGHT LRLQLEIIEK SYKEKLQEIY RLLQESITIK
      541 DIEVKKETIF NDEKYIKAML SYIIRDLLKF RQLHDNNEQL KAMVVCFSSK QARLANLLFN
      601 EVQEEVLQKN PNLRILNKLK SSLILHDEQE VKEKIYSFKY EDTDIVFVFN MLLTGFDLPN
      661 LKRLYIHREL KDHNLLQALA RVNRPYNNMA FGYLIDFVGI QENFDKTTDD YLKELNRFNQ
      721 SDSNSDSNIK DIFADREVLE KDIKNAYDDL FDYPIHNIED MTSAIVNMSG INELQKVSHA
      781 IKTLKERYNL IRTSNDEKIL SLKEKIDIEK INKISSMLTQ KAKCLHALKN INEPKNPNDL
      841 IILEDLIALL DFKIAYKESK ELHFKESEEI STKQKQAKEI LEKIPDQKDK EIQKIVKDFS
      901 KLLQTPATSQ NFDGISHSYS AIISQLKQHK EQTTHLLNKY NNDLSYAITH KRLHKHFMKE
      961 NISDPVGIFT ILSALKSAID ERISKRQEIL NEEDYLKNTI KVELRNAFKE NPSLKDLEKE
     1021 KEFIAQTLFN ELQNHHQGNS HAQ
//