LOCUS       WQZ29969.1               946 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori DEAD/DEAH box helicase family protein protein.
ACCESSION   CP079244-32
PROTEIN_ID  WQZ29969.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001074863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAKKKDLTTD NEIFVAQKLA EEELNINEIN DPLEMLDFKS FDSNKELLDY QQQALINAFR
       61 MLVAYFRDFK ENKKEFYAFY QEHYSFANCD FTNKKLNPLL KGYFKVENHC VSFENFINRL
      121 AFYMATGSGK TIVIIKLVEL LSVAIRMGLI PKKNIMFFSA NENLIKQFEK EIEKYNRGKD
      181 FSKQIDFKNL KSITHQDFHR APKGFFEKIA LFYYRADLMN DEESKENLLN YKDYWDNGEN
      241 YVILDEAHKG NKSESKRQAI FSLLSLKGFL FNFSATFTEE SDLITSVYNL SVGEWVKLGY
      301 GKESVLLKKN NLNAFKDLKD LNDREKEIAL LKALLLLGMQ KRYKTEGYFH DPLMLVFTHS
      361 VNVKNSDAEI FFKTLARVIE NDDGNDFLKA KEDLLEELKD PEFLFSANKD KDYKVKVFKE
      421 GLKSMDFKGL KEEVFYASNG HIEVIINPKN NQEIAFKLNT SDKVFCLIKI GDITEWICEK
      481 LKSVKVVSKN LSFKEESYFS QIDRSSINIL VGSRTFETGW DSTRPSVILF LNIGLDDDAK
      541 KLVKQSFGRG VRIESVKNQR QRLAYLDIDE AIKENLKPNA AMLETLFVIP TNHASLEAIL
      601 KIQKESENRG ENRGSWREIK LEKTPIKHDL FVPCYRKEPT SILKLPENAS FKMSEKNFKD
      661 LKEYFNLMSE KHFILKHEIY DPKDYATLKD MIQKAHFKKV STWHYKDLDY MISEIKGKLY
      721 PNQKVPKDEF NALDNEKIVH FKRIKVKADK QETLIKTIQE VKEHAPLEDK TFKVDDAELL
      781 KLKEHYYTPL IKAKDCDWLK HVVKVKSEID FLQELQDQET TKTLQANYDF WAFSKIDEHL
      841 DNLFIPYIND AAERRFFPDF IFWLQKGDTQ IICFIDPKGT KISDYQHKAD AYKLFKDKIF
      901 NPKNDPYFKI KVVLKFYGDK DRVGEKYRDY WIQKGKLNDF FLTLRD
//