LOCUS WQZ29954.1 787 aa PRT BCT 29-DEC-2023 DEFINITION Helicobacter pylori VirB4 family type IV secretion/conjugal transfer ATPase protein. ACCESSION CP079244-15 PROTEIN_ID WQZ29954.1 SOURCE Helicobacter pylori ORGANISM Helicobacter pylori Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter. REFERENCE 1 (bases 1 to 1570870) AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and Rabkin,C.S. CONSRTM HpGP Research Network TITLE The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes JOURNAL Nat Commun 14 (1), 8184 (2023) PUBMED 38081806 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1570870) AUTHORS Camargo,M.C. and Rabkin,C.S. TITLE Direct Submission JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609 Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. 4 Assembly Name :: HpGP-TWN-021 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 2661x Sequencing Technology :: PacBio Sequel II ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/16/2021 08:12:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 5.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 1,497 CDSs (total) :: 1,452 Genes (coding) :: 1,391 CDSs (with protein) :: 1,391 Genes (RNA) :: 45 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 36 ncRNAs :: 3 Pseudo Genes (total) :: 61 CDSs (without protein) :: 61 Pseudo Genes (ambiguous residues) :: 0 of 61 Pseudo Genes (frameshifted) :: 44 of 61 Pseudo Genes (incomplete) :: 11 of 61 Pseudo Genes (internal stop) :: 18 of 61 Pseudo Genes (multiple problems) :: 12 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Helicobacter pylori" /mol_type="genomic DNA" /strain="HpGP-TWN-021" /isolation_source="Biopsy" /host="Homo sapiens" /db_xref="taxon:210" /geo_loc_name="Taiwan" /lat_lon="23.30 N 121.00 E" /collected_by="Maria Camargo and Charles Rabkins" protein /locus_tag="E5P95_00100" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000890518.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLEKLLSTVK QKVSNYFLGV LPKSYSMSEE NNILGLYDEH FLLTKNENLV GILRLEGVSY 61 THLSTEQLQD LFTERQMALD SLEKVVARLV VKRRKIDHQQ NIQTNSKYLQ AILNQFENKE 121 VYENQYFLVL ESTHSLQGVL EHKKKSLMHA NRENFKDILS YKAHFLQETL KSLEIQLKNY 181 APKLLSSKEV LNFYAEYING FDLPLKPLVG GYLSDSYIAS SITFEKDYFI QESFNQKTYN 241 RLIGIKAYES ERITSIAIGA LLYQETPLDI IFSIEPMSVN KTLSFLKERA KFSMSNLVKN 301 ELLEYQELVK TKRLSMQKFA LNILIKAPSL EDLDTQTSLV LGLLFKENLV GVIETFGLKG 361 GYFSFFPERI HLNHRLRFLT SKALTCLMVF ERQNLGFKAN SWGNSPLSVF KNLDYSPFLF 421 NFHNQEVSYN NAKEIARVNG HTLIIGATGS GKSTLISFLM MSALKYQNMR LLAFDRMQGL 481 YSFTKFFKGH YHDGKSFSIN PFCLEPNLQN LEFLQSFFLS MFDLAPSRDK EALEDMNAIL 541 GAIKSLYETL YPKAFSLLDF KETLKRTSSN QLGLSLEPYL NNPLFNALND AFNSNAFLNV 601 INLDTITQNP KDLGLLAYYL FYKILEESRK NDSGFLVFLD EFKSYVENDL LNAKINALIT 661 QARKANGVVV LALQDIYQLS GVKNAHSFLS NMGTLILYPQ KNARELKHHF NVPLSETEIS 721 FLENTPLYAR QVLVKNLGNG SSNMIDVNLE SLGRYLKIFN SDSSHVNKVK ALQKDYPKEW 781 REKLLKS //