LOCUS       WQZ29875.1               841 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori TonB-dependent receptor family protein protein.
ACCESSION   CP079244-1382
PROTEIN_ID  WQZ29875.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015643547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MHKKVLLALT ASLICQESLF AKDKDYTLGK VSTAGKKDKS DYSGQVNLGY SGITAPKSWQ
       61 DEEVKKYTGS RTVISNKALT QQANQSIEEA LQNVPGLQIR NATGVGAMPT IQIRGFGAGG
      121 SGHSDATLML VNGIPVYMAP YAHIELDIFP VTFQAIDRID VIKGGGSVQY GPNTYGGIVN
      181 IITKPIPTQW ENQAAERITY WAKARNAGFA APPDKTGDPS FIKSLGNNLL YNTYVRSGGM
      241 INKHVGIQAQ ANWVRGQGFR DNSPSSISNY WLDGVYDINE NNGIKAYYQY YDFAIAQPGS
      301 LSEQDYKINR FANLRPINQK GGRSQRFGAV YENRFGDLDR VGGTFSFTYY GQLMTRDFQV
      361 SSSYNSANTV TCFSEAACRA AGLPQGYNLA VPYYATNYNG WAEVENPVRS INNAFEPKVN
      421 LIVNTGKVRQ TFIMGLRFMT TTFLQRQYLN TNECPTKTSG EGAGFLCEGA NVMSGWQPHI
      481 KHGVYRNWNN WRNNYTAVYL SDRIEAWDGR FFIVPGLRYA FVQYNNENAA NWTQIPEKDL
      541 RKIKHMNNWM PSTNIGFIPV QGDHNVLTYF NYQRSFVPPQ LDVLSYGGAE YFTQHFDTVE
      601 AGARYTYKDK FSFNADYFRI WARDFATGQY SVYTSGPMKG NVRPINGYSQ GVELELYYRP
      661 IRGLQFHAAF NYIDTRVTSH GPLTDLNGDV LKGTSYNKHF PFVSPFQFIL DARYNWHKTT
      721 IGISSYFYSR AYSGISNSAA GGYYGMQYYS GGNNYESVLN SGYQCEAWCM TQHEGLLPWY
      781 WVWNIQVSQI FWENGRHRVT GSLQINNIFN MKYYFTGIGS SPAGLQPAPG RSVTAYLNYT
      841 F
//